Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

21959872 .. 21960438

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGTCCGAAGAAGCAACCGTGGCCGTCGCGATCGAGACGGTCGAGAATCCTCCTCCCGAGCCGGTCACCGCCGAGACGGCGGACGACAAACCGGCAGACAATCCCGGTAAGGCCAGCAAGGCCAAGGAGCCCAAAGCGAAGAAGGCACCTGCTCCGAAGAAGCCGAGAGCCGCCCCCGCTCACCCTCCGTACGAAGAGATGGTTAAGGACGCAATTGTGGCTTTGAAGGAGAGGACTGGTTCGAGCCAGTACGCGATCACTAAGTTCATCGAGGAGAAGCACAAGCAGCTGCCGCCCAACTTCAAGAAGCTTCTGCTCTTCCATTTGAAGAAGCTTGTGAGTTCCGATAAGATCGATCAAGGTCAAAAACTCCTACAAGCTCCCGCCTGTGAGGTCCTCGGCGCCGAAGCCTTCTTCTCCGGTGAAGAAGAAACCGGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

149

Amino Acids

16.03

Weight (kDa)

6.85

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	2 cut(s)	148, 404
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	2 cut(s)	32, 257
AciI	CCGC	7 cut(s)	72, 83, 174, 180, 296, 387, 442
AcoI	YGGCCR	2 cut(s)	24, 439
AcyI	GRCGYC	2 cut(s)	5, 405
AfaI	GTAC	2 cut(s)	194, 254
AgsI	TTSAA	3 cut(s)	229, 307, 331
AluBI	AGCT	4 cut(s)	292, 313, 337, 383
AluI	AGCT	4 cut(s)	292, 313, 337, 383
Alw26I	GTCTC	2 cut(s)	32, 71
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	4 cut(s)	24, 114, 123, 439
ApeKI	GCWGC	2 cut(s)	289, 292
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	61, 176, 437
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	2 cut(s)	148, 404
BanII	GRGCYC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	279, 301
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	11, 96
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	32, 71
BfoI	RGCGCY	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	160
BglI	GCCNNNNNGGC	2 cut(s)	80, 122
BisI	GCNGC	5 cut(s)	174, 290, 293, 296, 442
BlsI	GCNGC	5 cut(s)	175, 291, 294, 297, 443
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	132, 150, 406
BmrFI	CCNGG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	5, 405
BsaJI	CCNNGG	3 cut(s)	21, 126, 400
BsaWI	WCCGGW	1 cut(s)	422
Bse118I	RCCGGY	3 cut(s)	64, 94, 437
Bse1I	ACTGG	2 cut(s)	244, 250
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	21, 126, 400
BseNI	ACTGG	2 cut(s)	244, 250
BseRI	GAGGAG	2 cut(s)	45, 290
BseX3I	CGGCCG	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	279, 301
Bsh1236I	CGCG	2 cut(s)	32, 257
Bsh1285I	CGRYCG	3 cut(s)	36, 45, 442
BshFI	GGCC	4 cut(s)	26, 116, 125, 441
BshNI	GGYRCC	2 cut(s)	148, 404
BshVI	ATCGAT	1 cut(s)	357
BsiEI	CGRYCG	3 cut(s)	36, 45, 442
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	5 cut(s)	65, 95, 108, 423, 438
BsiWI	CGTACG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	32, 71
BsmBI	CGTCTC	2 cut(s)	32, 71
BsnI	GGCC	4 cut(s)	26, 116, 125, 441
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	33, 258, 354, 358
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	7 cut(s)	72, 83, 174, 180, 296, 387, 442
BspANI	GGCC	4 cut(s)	26, 116, 125, 441
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	2 cut(s)	32, 257
BspLI	GGNNCC	3 cut(s)	132, 150, 406
BspMI	ACCTGC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	148, 404
BsrBI	CCGCTC	1 cut(s)	182
BsrFI	RCCGGY	3 cut(s)	64, 94, 437
BsrI	ACTGG	2 cut(s)	244, 250
BssAI	RCCGGY	3 cut(s)	64, 94, 437
BssECI	CCNNGG	3 cut(s)	21, 126, 400
BssMI	GATC	4 cut(s)	33, 258, 354, 358
BssNI	GRCGYC	2 cut(s)	5, 405
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	22, 43
Bst6I	CTCTTC	2 cut(s)	192, 326
BstACI	GRCGYC	2 cut(s)	5, 405
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	32, 257
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	4 cut(s)	36, 261, 357, 361
BstMAI	GTCTC	2 cut(s)	32, 71
BstMBI	GATC	4 cut(s)	33, 258, 354, 358
BstMCI	CGRYCG	3 cut(s)	36, 45, 442
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 80, 122, 146, 179, 221, 289, 295
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	2 cut(s)	32, 257
BstV1I	GCAGC	2 cut(s)	279, 301
BstZI	CGGCCG	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	26, 116, 125, 441
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	21
BtuMI	TCGCGA	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	3 cut(s)	64, 94, 437
Cfr13I	GGNCC	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	193, 253
CviQI	GTAC	2 cut(s)	193, 253
DdeI	CTNAG	1 cut(s)	264
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	4 cut(s)	35, 260, 356, 360
DpnII	GATC	4 cut(s)	33, 258, 354, 358
EaeI	YGGCCR	2 cut(s)	24, 439
EagI	CGGCCG	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	192, 326
EarI	CTCTTC	2 cut(s)	192, 326
EciI	GGCGGA	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	2 cut(s)	32, 71
FauI	CCCGC	2 cut(s)	187, 394
Fnu4HI	GCNGC	5 cut(s)	174, 290, 293, 296, 442
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	174, 290, 293, 296, 442
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	5 cut(s)	174, 290, 293, 296, 442
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	4 cut(s)	26, 116, 125, 441
HapII	CCGG	5 cut(s)	65, 95, 108, 423, 438
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	2 cut(s)	5, 405
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	311, 335
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	5 cut(s)	65, 95, 108, 423, 438
HphI	GGTGA	3 cut(s)	61, 176, 437
Hpy188I	TCNGA	3 cut(s)	10, 159, 349
Hpy188III	TCNNGA	5 cut(s)	31, 37, 46, 59, 307
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	139, 223, 424
HpyCH4III	ACNGT	2 cut(s)	22, 43
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 80, 122, 146, 179, 221, 289, 295
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	2 cut(s)	5, 405
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	4 cut(s)	33, 258, 354, 358
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	3 cut(s)	130, 160, 388
LpnPI	CCDG	9 cut(s)	78, 108, 121, 130, 165, 225, 263, 403, 436
Lsp1109I	GCAGC	2 cut(s)	279, 301
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	35, 260, 356, 360
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	4 cut(s)	33, 258, 354, 358
MboII	GAAGA	9 cut(s)	23, 154, 172, 209, 313, 343, 409, 440, 443
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	216
Mly113I	GGCGCC	1 cut(s)	405
MnlI	CCTC	7 cut(s)	63, 66, 198, 228, 268, 388, 410
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	5 cut(s)	65, 95, 108, 423, 438
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	32, 257
MwoI	GCNNNNNNNGC	8 cut(s)	23, 80, 122, 146, 179, 221, 289, 295
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	33, 258, 354, 358
NlaIV	GGNNCC	3 cut(s)	132, 150, 406
NmeAIII	GCCGAG	3 cut(s)	100, 192, 381
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	49
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	175, 291, 294, 297, 443
Ple19I	CGATCG	1 cut(s)	36
PluTI	GGCGCC	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	67
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	132, 150, 406
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	292
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	194, 254
RsaNI	GTAC	2 cut(s)	193, 253
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	5 cut(s)	174, 290, 293, 296, 442
Sau3AI	GATC	4 cut(s)	33, 258, 354, 358
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	154, 294, 315, 339, 367, 385, 399
SfiI	GGCCNNNNNGGCC	1 cut(s)	122
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	7 cut(s)	72, 83, 174, 180, 296, 387, 442
SspDI	GGCGCC	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	22, 43
TaqI	TCGA	5 cut(s)	36, 45, 245, 273, 357
TasI	AATT	1 cut(s)	216
TauI	GCSGC	3 cut(s)	176, 298, 444
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	289, 292
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.