RLG00000012318

Histone H1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003009
Physical Location & Seq
Forward (+)
17440135 .. 17441217
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012318

Sequence Viewer

Length: 921 bp
ATGGCCGAGGACGAACAGATCGTCGCCACCACCGAGACCATCGAGCCGGCAACCGAGACCGTCGAGGCCCCGCCGGCCGACGACAAGCCGGAGGCCAAGTCCGGCAAGGCCTCCAAGGCCAAGGAGCCCAAGGCCAAGAAGCCCGCTGCGCCCAAGAAGGCCAGGACTGCTCCCACTCATCCTCCTTATGAAGAGATGATCAAGGATGCGATTGTGACACTTAAGGATAGGACTGGTTCGAGCCAGTATGCGATCACTAAGTTCATCGAGGAGAAGCACAAGCAGCTCCCTCCAAACTTCAAGAAGCTTCTGCTCTACCATTTGAAGAAGCTCGTCAGCTCCGATAAGCTCGCCAAGGTCAGGAGCTCCTATAAGATTCCGTCGGTTCGGTCTGCCGCAGCTCCACCTAAGCCCGCTGCTGCTCCGGCCAAGAAGAAGCCTGCCGCCGCGGCCAAGCCCAAGGCCAAGGCTGCTGCGAAGCCAAAGGGAAAGACTAAGTCGGTCAAGGCGGCGAGCAAGTCTCCGGCCAAGGCTAAGGCGGCTGCTGCTAAGCCAAAGCCGAAGCCCAAAGCCAAGCCTGCTGCCAAGGCAAAGGCGGCTCCGGCCAAGACCAAGGCGGCTGCTCCGGCCAAGGCCAAGGCTGCTCCGGCTAAGGCAAAGGCTGCTCCGGCCAAGACCAAGGCTGCCCCGGCTGCCAAGCCTAAAGCAGCAGCTCCCAAGCCCAAGCTTAAGGAGAAGCCAGCCAAGGCTGCGAGGACGTTGACCAGGTCGTCGCCTGGGAGGAAGGCTCCGGCGGCCAGGGCGGCCAAGCCTGCGCCGAAGAAGGCAGCGACACCGAAGAAGGCACCCACCCGTACTGTCAAGCCGAGAAGCGTCAAGTCGCCGGCGAAGAAAGCACCAGCTAGGAAGGGAAGAAAGTGA

Protein Analysis

307

Amino Acids

31.74

Weight (kDa)

10.7

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 60 - 121 6e-18 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 844
AccII CGCG 1 cut(s) 449
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 1 cut(s) 360
AflII CTTAAG 2 cut(s) 221, 728
AgsI TTSAA 2 cut(s) 301, 325
AjnI CCWGG 4 cut(s) 161, 764, 775, 797
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 3 cut(s) 29, 50, 525
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspLEI GCGC 2 cut(s) 151, 817
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 689
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 2 cut(s) 129, 368
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 4 cut(s) 163, 766, 777, 799
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 3 cut(s) 29, 50, 525
BfaI CTAG 1 cut(s) 903
BfrI CTTAAG 2 cut(s) 221, 728
BglI GCCNNNNNGGC 4 cut(s) 74, 116, 449, 803
BlpI GCTNAGC 1 cut(s) 549
Bme1390I CCNGG 5 cut(s) 163, 689, 766, 777, 799
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 5 cut(s) 69, 126, 600, 789, 846
BmrFI CCNGG 5 cut(s) 163, 689, 766, 777, 799
BmsI GCATC 1 cut(s) 196
BplI GAGNNNNNCTC 4 cut(s) 505, 537, 772, 804
Bpu10I CCTNAGC 3 cut(s) 408, 534, 651
Bpu1102I GCTNAGC 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 689
BsaI GGTCTC 2 cut(s) 29, 50
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse118I RCCGGY 3 cut(s) 46, 73, 883
Bse1I ACTGG 2 cut(s) 238, 244
BseBI CCWGG 4 cut(s) 163, 766, 777, 799
BseGI GGATG 2 cut(s) 178, 211
BseLI CCNNNNNNNGG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 238, 244
BseRI GAGGAG 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 844
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 3 cut(s) 29, 50, 525
Bso31I GGTCTC 2 cut(s) 29, 50
Bsp1286I GDGCHC 2 cut(s) 129, 368
Bsp143I GATC 3 cut(s) 18, 198, 252
Bsp1720I GCTNAGC 1 cut(s) 549
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 5 cut(s) 69, 126, 600, 789, 846
BspT107I GGYRCC 1 cut(s) 844
BspTI CTTAAG 2 cut(s) 221, 728
BspTNI GGTCTC 2 cut(s) 29, 50
BsrFI RCCGGY 3 cut(s) 46, 73, 883
BsrI ACTGG 2 cut(s) 238, 244
BssAI RCCGGY 3 cut(s) 46, 73, 883
BssMI GATC 3 cut(s) 18, 198, 252
Bst2UI CCWGG 4 cut(s) 163, 766, 777, 799
Bst4CI ACNGT 2 cut(s) 61, 859
Bst6I CTCTTC 1 cut(s) 186
BstAFI CTTAAG 2 cut(s) 221, 728
BstAPI GCANNNNNTGC 1 cut(s) 662
BstDEI CTNAG 6 cut(s) 258, 408, 495, 534, 549, 651
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 178, 211
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 2 cut(s) 151, 817
BstKTI GATC 3 cut(s) 21, 201, 255
BstMAI GTCTC 3 cut(s) 29, 50, 525
BstMBI GATC 3 cut(s) 18, 198, 252
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 4 cut(s) 163, 766, 777, 799
BstSCI CCNGG 5 cut(s) 161, 687, 764, 775, 797
BstUI CGCG 1 cut(s) 449
BstZI CGGCCG 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 178, 211
CfoI GCGC 2 cut(s) 151, 817
Cfr10I RCCGGY 3 cut(s) 46, 73, 883
Cfr13I GGNCC 1 cut(s) 67
Cfr42I CCGCGG 1 cut(s) 450
CseI GACGC 1 cut(s) 862
CsiI ACCWGGT 1 cut(s) 764
Csp6I GTAC 1 cut(s) 855
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 6 cut(s) 258, 408, 495, 534, 549, 651
DpnI GATC 3 cut(s) 20, 200, 254
DpnII GATC 3 cut(s) 18, 198, 252
DrdI GACNNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 1 cut(s) 769
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 366
EclXI CGGCCG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 110
Eco24I GRGCYC 2 cut(s) 129, 368
Eco31I GGTCTC 2 cut(s) 29, 50
Eco52I CGGCCG 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 4 cut(s) 161, 764, 775, 797
EcoT38I GRGCYC 2 cut(s) 129, 368
FaiI YATR 3 cut(s) 189, 249, 372
FauI CCCGC 3 cut(s) 78, 151, 421
FbaI TGATCA 1 cut(s) 198
FokI GGATG 2 cut(s) 165, 218
FriOI GRGCYC 2 cut(s) 129, 368
FspBI CTAG 1 cut(s) 903
GlaI GCGC 2 cut(s) 150, 816
HgaI GACGC 1 cut(s) 862
HhaI GCGC 2 cut(s) 151, 817
Hin6I GCGC 2 cut(s) 149, 815
HinP1I GCGC 2 cut(s) 149, 815
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 2 cut(s) 305, 725
HinfI GANTC 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 301, 361
Hpy8I GTNNAC 1 cut(s) 762
Hpy99I CGWCG 5 cut(s) 26, 65, 83, 385, 775
HpyAV CCTTC 5 cut(s) 151, 778, 817, 835, 901
HpyCH4III ACNGT 2 cut(s) 61, 859
HpyCH4IV ACGT 1 cut(s) 758
HpyF3I CTNAG 6 cut(s) 258, 408, 495, 534, 549, 651
HpySE526I ACGT 1 cut(s) 758
HspAI GCGC 2 cut(s) 149, 815
KroI GCCGGC 3 cut(s) 46, 73, 883
KroNI GCCGGC 3 cut(s) 48, 75, 885
Ksp22I TGATCA 1 cut(s) 198
KspI CCGCGG 1 cut(s) 450
Kzo9I GATC 3 cut(s) 18, 198, 252
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 764
MaeI CTAG 1 cut(s) 903
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 20, 200, 254
MboI GATC 3 cut(s) 18, 198, 252
MboII GAAGA 6 cut(s) 203, 337, 445, 832, 850, 901
MhlI GDGCHC 2 cut(s) 129, 368
MnlI CCTC 8 cut(s) 58, 85, 121, 192, 262, 300, 747, 774
MreI CGCCGGCG 1 cut(s) 883
MroNI GCCGGC 3 cut(s) 46, 73, 883
MseI TTAA 2 cut(s) 222, 729
MspA1I CMGCKG 3 cut(s) 146, 416, 449
MspCI CTTAAG 2 cut(s) 221, 728
MspR9I CCNGG 5 cut(s) 163, 689, 766, 777, 799
MvaI CCWGG 4 cut(s) 163, 766, 777, 799
MvnI CGCG 1 cut(s) 449
NaeI GCCGGC 3 cut(s) 48, 75, 885
NciI CCSGG 1 cut(s) 689
NdeII GATC 3 cut(s) 18, 198, 252
NgoMIV GCCGGC 3 cut(s) 46, 73, 883
NlaIV GGNNCC 5 cut(s) 69, 126, 600, 789, 846
NmeAIII GCCGAG 2 cut(s) 31, 891
NmuCI GTSAC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 110
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 30, 339
PdiI GCCGGC 3 cut(s) 48, 75, 885
PfeI GAWTC 1 cut(s) 376
PflFI GACNNNGTC 2 cut(s) 496, 766
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 4 cut(s) 161, 764, 775, 797
PspGI CCWGG 4 cut(s) 161, 764, 775, 797
PspN4I GGNNCC 5 cut(s) 69, 126, 600, 789, 846
PspPI GGNCC 1 cut(s) 67
PsyI GACNNNGTC 2 cut(s) 496, 766
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
SacI GAGCTC 1 cut(s) 368
SacII CCGCGG 1 cut(s) 450
SaqAI TTAA 2 cut(s) 222, 729
Sau3AI GATC 3 cut(s) 18, 198, 252
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 5 cut(s) 163, 689, 766, 777, 799
SduI GDGCHC 2 cut(s) 129, 368
SexAI ACCWGGT 1 cut(s) 764
SfaNI GCATC 1 cut(s) 196
SfiI GGCCNNNNNGGCC 3 cut(s) 74, 116, 803
Sfr303I CCGCGG 1 cut(s) 450
SgrAI CRCCGGYG 1 cut(s) 883
SgrBI CCGCGG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 221, 728
SmoI CTYRAG 2 cut(s) 221, 728
SseBI AGGCCT 1 cut(s) 110
SspMI CTAG 1 cut(s) 903
SstI GAGCTC 1 cut(s) 368
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 5 cut(s) 161, 687, 764, 775, 797
TaaI ACNGT 2 cut(s) 61, 859
TaiI ACGT 1 cut(s) 761
TaqI TCGA 4 cut(s) 42, 63, 239, 267
TaqII GACCGA 2 cut(s) 378, 490
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 2 cut(s) 222, 729
Tru9I TTAA 2 cut(s) 222, 729
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 204, 253
TspGWI ACGGA 1 cut(s) 369
Tth111I GACNNNGTC 2 cut(s) 496, 766
Vha464I CTTAAG 2 cut(s) 221, 728
XspI CTAG 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.