Domain in histone families 1 and 5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G30620 AT2G30620 |
| fragaria_vesca | FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410 |
| malus_domestica | MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1 |
| prunus_persica | Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1 |
| pyrus_communis | pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270 |
| rosa_chinensis | RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241 |
| rosa_laevigata | RLG00000012318 RLG00000025721 |
| rosa_multiflora | Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008 |
| rosa_roxburghii | Rroxscaffold_6G00428260 Rroxscaffold_7G00179420 |
| rosa_rugosa | Rorug02G0628700 Rorug06G0202300 |
| rosa_samantha | Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600 |
| rosa_wichuraiana | Rw3G002260 Rw6G027060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 155 |
| AciI | CCGC | 4 cut(s) | 41, 153, 155, 162 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AgsI | TTSAA | 2 cut(s) | 76, 127 |
| AluBI | AGCT | 3 cut(s) | 85, 103, 130 |
| AluI | AGCT | 3 cut(s) | 85, 103, 130 |
| Alw21I | GWGCWC | 1 cut(s) | 40 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 1 cut(s) | 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 40 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BisI | GCNGC | 2 cut(s) | 6, 156 |
| BlsI | GCNGC | 2 cut(s) | 7, 157 |
| BsaJI | CCNNGG | 3 cut(s) | 63, 153, 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 2 cut(s) | 44, 74 |
| BseDI | CCNNGG | 3 cut(s) | 63, 153, 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseNI | ACTGG | 2 cut(s) | 44, 74 |
| BseRI | GAGGAG | 4 cut(s) | 126, 133, 136, 139 |
| Bsh1236I | CGCG | 1 cut(s) | 155 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 1 cut(s) | 40 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 40 |
| BspACI | CCGC | 4 cut(s) | 41, 153, 155, 162 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspFNI | CGCG | 1 cut(s) | 155 |
| BsrI | ACTGG | 2 cut(s) | 44, 74 |
| BssECI | CCNNGG | 3 cut(s) | 63, 153, 177 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 2 cut(s) | 36, 101 |
| BstDSI | CCRYGG | 2 cut(s) | 153, 177 |
| BstFNI | CGCG | 1 cut(s) | 155 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 40, 161 |
| BstUI | CGCG | 1 cut(s) | 155 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 2 cut(s) | 153, 177 |
| Cac8I | GCNNGC | 2 cut(s) | 36, 101 |
| Cfr42I | CCGCGG | 1 cut(s) | 156 |
| CviJI | RGCY | 9 cut(s) | 5, 29, 79, 85, 103, 119, 130, 158, 176 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 29, 79, 85, 103, 119, 130, 158, 176 |
| FaiI | YATR | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 156 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 156 |
| GluI | GCNGC | 2 cut(s) | 6, 156 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 1 cut(s) | 96 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 1 cut(s) | 41 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 1 cut(s) | 64 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| Hpy99I | CGWCG | 3 cut(s) | 20, 23, 92 |
| HpyAV | CCTTC | 2 cut(s) | 67, 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 40, 161 |
| KspI | CCGCGG | 1 cut(s) | 156 |
| LmnI | GCTCC | 2 cut(s) | 135, 146 |
| LpnPI | CCDG | 4 cut(s) | 55, 57, 109, 186 |
| MhlI | GDGCHC | 1 cut(s) | 40 |
| MnlI | CCTC | 9 cut(s) | 58, 63, 103, 130, 144, 147, 154, 157, 160 |
| MseI | TTAA | 1 cut(s) | 202 |
| MspA1I | CMGCKG | 1 cut(s) | 155 |
| MspI | CCGG | 1 cut(s) | 96 |
| MvnI | CGCG | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 40, 161 |
| PkrI | GCNGC | 2 cut(s) | 7, 157 |
| SacII | CCGCGG | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 202 |
| SatI | GCNGC | 2 cut(s) | 6, 156 |
| SduI | GDGCHC | 1 cut(s) | 40 |
| SetI | ASST | 4 cut(s) | 87, 105, 114, 132 |
| Sfr303I | CCGCGG | 1 cut(s) | 156 |
| SgrBI | CCGCGG | 1 cut(s) | 156 |
| SsiI | CCGC | 4 cut(s) | 41, 153, 155, 162 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TauI | GCSGC | 1 cut(s) | 158 |
| Tru1I | TTAA | 1 cut(s) | 202 |
| Tru9I | TTAA | 1 cut(s) | 202 |
| TseI | GCWGC | 1 cut(s) | 5 |