Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

9041603 .. 9045500

Gene Structure 3898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCCGCTGAAACCGCCGTCGTCAAGGCCAAGCGAGCACCGCCAGTTCACCCTCCCTTCTCCGAGATGATTACGGAGGCGATTGTGGCGCTGAATGAGAGGATTGGTTCAAGCCAGTACGCCATCACCAAATTCATGGAGGAGAAGCACAAGCAGTTGCCTCAGAGCTTCAGGAAGCTTCTGCTTCTCAACCTGAAGAAGCTCGTCGCCTCCGGCAAGCTCCTCAAGGATTCATATGTGAGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

83

Amino Acids

9.17

Weight (kDa)

9.93

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	17 - 75	9.5e-18	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	6, 15, 41
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	154, 215
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	111
AluBI	AGCT	4 cut(s)	168, 178, 202, 220
AluI	AGCT	4 cut(s)	168, 178, 202, 220
Alw21I	GWGCWC	1 cut(s)	40
AoxI	GGCC	2 cut(s)	3, 27
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	41, 118
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	44, 115
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	44, 115
BseRI	GAGGAG	2 cut(s)	155, 212
BshFI	GGCC	2 cut(s)	5, 29
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	213
BsnI	GGCC	2 cut(s)	5, 29
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	3 cut(s)	6, 15, 41
BspANI	GGCC	2 cut(s)	5, 29
BspCNI	CTCAG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	44, 115
BstC8I	GCNNGC	2 cut(s)	36, 218
BstDEI	CTNAG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 35, 40, 86
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	5, 29
Cac8I	GCNNGC	2 cut(s)	36, 218
CfoI	GCGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	7 cut(s)	5, 29, 114, 168, 178, 202, 220
CviKI_1	RGCY	7 cut(s)	5, 29, 114, 168, 178, 202, 220
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	2 cut(s)	154, 215
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	137, 235, 237
FatI	CATG	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	5, 29
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	41, 118
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	64, 165
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	23, 209
HpyAV	CCTTC	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 35, 40, 86
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	57, 128, 157, 206, 226
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	7 cut(s)	63, 70, 93, 133, 171, 220, 233
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	14, 35, 40, 86
NdeI	CATATG	1 cut(s)	235
NlaIII	CATG	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	5 cut(s)	170, 180, 195, 204, 222
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	6, 15, 41
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	124, 222
TspGWI	ACGGA	1 cut(s)	89
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.