Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

18585959 .. 18586444

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1078700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGACCAAAGAAGCCTCTGTGGTCGTCGCGACCAAGATGGTTGAGAATCCTCCTCCTGAGCCAGTTACCACCGATACCGCAGACGACAAACCGACGACAAAGGCCAGCAAGGCAAAGGAGCCCAAGGCGAAAAAGGCACCCGCTTCGAGGAAGCCTAGAAGTGCTCCGGTTCATCCTCTATATGAAGAGATGGTTAAGGAAGCGATTGTGATGTTGAAGGAAATGACTGGTTCGAGCCAGTACACGATCACTAAGTACATCGAGGAGAAACATAACCAGCTGCCACCCAACTTCAAGAATCTTTTGCTTTTCCATTTGAAAAAGCTTGTGAGTTCTAATAAGATCGTCAAGGTCAAAAACTCCTTCAAGCTCCCGCCTGTGAAGTCATCGACTCCAAAGCCTGCTTCTCTGGTGAAGAAGAAGCCGACGTCCGCCGTTAAACTGAAGGCAAAAGTTGTTGCTGCGAAACCTAAGGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

162

Amino Acids

17.66

Weight (kDa)

10.15

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	59 - 125	1.6e-16	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	81, 144, 377, 435
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	2 cut(s)	245, 260
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	220, 298, 322, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	3 cut(s)	283, 328, 373
AluI	AGCT	3 cut(s)	283, 328, 373
Alw21I	GWGCWC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	283, 464
AsuHPI	GGTGA	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	270, 451
BccI	CCATC	2 cut(s)	34, 187
BceAI	ACGGC	1 cut(s)	422
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	284, 465
BlsI	GCNGC	2 cut(s)	285, 466
BmiI	GGNNCC	2 cut(s)	123, 141
Bpu10I	CCTNAGC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	3 cut(s)	65, 235, 241
Bse21I	CCTNAGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	65, 235, 241
BseRI	GAGGAG	2 cut(s)	45, 281
BseXI	GCAGC	2 cut(s)	270, 451
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	126, 169
Bsp143I	GATC	2 cut(s)	249, 345
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	4 cut(s)	81, 144, 377, 435
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	123, 141
BspT107I	GGYRCC	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	65, 235, 241
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	249, 345
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	109, 405
BstDEI	CTNAG	3 cut(s)	60, 255, 474
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	252, 348
BstMBI	GATC	2 cut(s)	249, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 137
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	270, 451
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	175
BtuMI	TCGCGA	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	109, 405
Csp6I	GTAC	2 cut(s)	244, 259
CviQI	GTAC	2 cut(s)	244, 259
DdeI	CTNAG	3 cut(s)	60, 255, 474
DpnI	GATC	2 cut(s)	251, 347
DpnII	GATC	2 cut(s)	249, 345
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	3 cut(s)	184, 186, 276
FauI	CCCGC	2 cut(s)	151, 384
Fnu4HI	GCNGC	2 cut(s)	284, 465
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	284, 465
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	284, 465
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	49, 301, 394
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	31, 59, 298
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	3 cut(s)	32, 100, 433
HpyAV	CCTTC	4 cut(s)	214, 376, 442, 474
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 137
HpyF3I	CTNAG	3 cut(s)	60, 255, 474
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	249, 345
LmnI	GCTCC	3 cut(s)	121, 172, 378
Lsp1109I	GCAGC	2 cut(s)	270, 451
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	251, 347
MboI	GATC	2 cut(s)	249, 345
MboII	GAAGA	3 cut(s)	200, 430, 433
MhlI	GDGCHC	2 cut(s)	126, 169
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	6 cut(s)	28, 63, 66, 144, 189, 259
MseI	TTAA	2 cut(s)	198, 441
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	113, 137
NdeII	GATC	2 cut(s)	249, 345
NlaIV	GGNNCC	2 cut(s)	123, 141
NruI	TCGCGA	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	49, 301
PkrI	GCNGC	2 cut(s)	285, 466
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	123, 141
PvuII	CAGCTG	1 cut(s)	283
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	245, 260
RsaNI	GTAC	2 cut(s)	244, 259
SaqAI	TTAA	2 cut(s)	198, 441
SatI	GCNGC	2 cut(s)	284, 465
Sau3AI	GATC	2 cut(s)	249, 345
SchI	GAGTC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	126, 169
SetI	ASST	7 cut(s)	285, 330, 357, 375, 434, 475, 485
SsiI	CCGC	4 cut(s)	81, 144, 377, 435
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	4 cut(s)	149, 236, 264, 392
TatI	WGTACW	2 cut(s)	243, 258
TfiI	GAWTC	2 cut(s)	49, 301
Tru1I	TTAA	2 cut(s)	198, 441
Tru9I	TTAA	2 cut(s)	198, 441
TseI	GCWGC	2 cut(s)	283, 464
TspDTI	ATGAA	2 cut(s)	164, 201
XspI	CTAG	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.