Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

33380970 .. 33382549

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1204100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGACCGAAGAAACAACCGTGGCCGTCGCGATCGAGACGGTCGAGAATCCTCCTCCCGAGCCGGTCACCGCCGAGACGGCGGACGACAAACCGGCAGACAATCCCGGTAAGCCCAGCAAGGCCAAGGAGCCCAAAGCGAAGAAGGCACCTGCTCCGAGGAAGCCGAGAGCCGCTCCCGCTCACCCTCCGTACGAAGAGATGGTTAAGGACGCGATTGTGACTTTGAAGGAAAGGACTGGTTCGAGCCAGTACGCGATCACTAAGTTCATCGAGGAGAAGCACAAGCAGCTGCCGCCCAACTTCAAGAAGCTTCTGCTCTTCCATTTGAAGAAGCTTGTGAGTTCTGATAAGATCGTTAAGATCAAAAACTCCTACAAGATCCCGCCTGTGAGGTCCTCGGCGCCGAAGCCTGCTTCTCCGGTGAAGAAGAAGCCGGCCGCTAAGCCCAAGGCAAAAGCTCCTGCTGCGAAGCCTAAGGGAGGGAAAAAGCCAGCTTCCAAAGCTCCGGCCAAGCCAAAGGCTGCTGCCGCCAAGCCTAAGGCGAAACCGAAGGCAAAGCCCGCAGCTAAGCCAAAAGCTGCTGCTCCGAAGCCCAAAGCGGCTGCTCCGGTTAAGTCTAAGCCTGCTGCCAAGCCTAAACCCGCCGCCAAGCCTAAACCCGCGGCCGCCAAGCCAAAAGCTGCTGCTGCCAAGCCCAAGGCGGCTGCTCCGAAGCCGAAGCCAAAGGAGAAGCCAGCCAAGGTGTCGAGGACGCTGACGAGGTCGTCTCCCGGAAGGAAAGCTCCGACCCCCCGGCCTGCCCCTAAGAAAGCGTCGGCTCCGAAGAAGGCTCCTGCGCGGAGCGTGAAGTCGCCGGCGAGGAAAGCTCCAGCTCGCAGAGGAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

298

Amino Acids

31.12

Weight (kDa)

10.79

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	62 - 124	5.6e-18	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
AasI	GACNNNNNNGTC	1 cut(s)	766
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	2 cut(s)	148, 403
AccBSI	CCGCTC	2 cut(s)	176, 182
AccII	CGCG	5 cut(s)	32, 215, 257, 665, 841
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	4 cut(s)	24, 438, 510, 666
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	194, 254
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	229, 307, 331
Alw26I	GTCTC	3 cut(s)	32, 71, 774
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	6 cut(s)	24, 123, 438, 510, 666, 797
AspLEI	GCGC	2 cut(s)	406, 841
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	3 cut(s)	108, 774, 796
AsuHPI	GGTGA	3 cut(s)	61, 176, 436
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	396
AxyI	CCTNAGG	2 cut(s)	477, 540
BanI	GGYRCC	2 cut(s)	148, 403
BanII	GRGCYC	1 cut(s)	135
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	11, 96
BcnI	CCSGG	3 cut(s)	108, 774, 796
BcoDI	GTCTC	3 cut(s)	32, 71, 774
BfoI	RGCGCY	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	80
BlpI	GCTNAGC	2 cut(s)	444, 570
Bme1390I	CCNGG	3 cut(s)	108, 774, 796
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	5 cut(s)	132, 150, 405, 822, 834
BmrFI	CCNGG	3 cut(s)	108, 774, 796
BplI	GAGNNNNNCTC	6 cut(s)	160, 192, 754, 786, 853, 885
BpmI	CTGGAG	1 cut(s)	855
Bpu1102I	GCTNAGC	2 cut(s)	444, 570
BpuMI	CCSGG	3 cut(s)	108, 774, 796
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	9 cut(s)	21, 126, 158, 399, 450, 663, 699, 741, 794
BsaWI	WCCGGW	2 cut(s)	421, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse118I	RCCGGY	4 cut(s)	64, 94, 436, 856
Bse1I	ACTGG	2 cut(s)	244, 250
Bse21I	CCTNAGG	2 cut(s)	477, 540
BseDI	CCNNGG	9 cut(s)	21, 126, 158, 399, 450, 663, 699, 741, 794
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseNI	ACTGG	2 cut(s)	244, 250
BseRI	GAGGAG	2 cut(s)	45, 290
BseX3I	CGGCCG	2 cut(s)	438, 666
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	5 cut(s)	32, 215, 257, 665, 841
Bsh1285I	CGRYCG	5 cut(s)	9, 36, 45, 441, 669
BshFI	GGCC	6 cut(s)	26, 125, 440, 512, 668, 799
BshNI	GGYRCC	2 cut(s)	148, 403
BsiEI	CGRYCG	5 cut(s)	9, 36, 45, 441, 669
BsiHKCI	CYCGRG	1 cut(s)	59
BsiWI	CGTACG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	3 cut(s)	32, 71, 774
BsmBI	CGTCTC	3 cut(s)	32, 71, 774
BsnI	GGCC	6 cut(s)	26, 125, 440, 512, 668, 799
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	33, 258, 354, 363, 381
Bsp1720I	GCTNAGC	2 cut(s)	444, 570
Bsp68I	TCGCGA	1 cut(s)	32
BspANI	GGCC	6 cut(s)	26, 125, 440, 512, 668, 799
BspFNI	CGCG	5 cut(s)	32, 215, 257, 665, 841
BspLI	GGNNCC	5 cut(s)	132, 150, 405, 822, 834
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	148, 403
BsrBI	CCGCTC	2 cut(s)	176, 182
BsrFI	RCCGGY	4 cut(s)	64, 94, 436, 856
BsrI	ACTGG	2 cut(s)	244, 250
BssAI	RCCGGY	4 cut(s)	64, 94, 436, 856
BssECI	CCNNGG	9 cut(s)	21, 126, 158, 399, 450, 663, 699, 741, 794
BssMI	GATC	5 cut(s)	33, 258, 354, 363, 381
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	4 cut(s)	126, 450, 699, 741
Bst4CI	ACNGT	2 cut(s)	22, 43
Bst6I	CTCTTC	2 cut(s)	192, 326
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	9 cut(s)	414, 438, 495, 564, 627, 738, 801, 858, 877
BstDEI	CTNAG	7 cut(s)	264, 444, 477, 540, 570, 621, 807
BstDSI	CCRYGG	2 cut(s)	21, 663
BstEII	GGTNACC	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstFNI	CGCG	5 cut(s)	32, 215, 257, 665, 841
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	406, 841
BstKTI	GATC	5 cut(s)	36, 261, 357, 366, 384
BstMAI	GTCTC	3 cut(s)	32, 71, 774
BstMBI	GATC	5 cut(s)	33, 258, 354, 363, 381
BstMCI	CGRYCG	5 cut(s)	9, 36, 45, 441, 669
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	106, 772, 794
BstUI	CGCG	5 cut(s)	32, 215, 257, 665, 841
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BstZI	CGGCCG	2 cut(s)	438, 666
Bsu36I	CCTNAGG	2 cut(s)	477, 540
BsuRI	GGCC	6 cut(s)	26, 125, 440, 512, 668, 799
BtgI	CCRYGG	2 cut(s)	21, 663
BtuMI	TCGCGA	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	9 cut(s)	414, 438, 495, 564, 627, 738, 801, 858, 877
CciNI	GCGGCCGC	1 cut(s)	666
CfoI	GCGC	2 cut(s)	406, 841
Cfr10I	RCCGGY	4 cut(s)	64, 94, 436, 856
Cfr13I	GGNCC	1 cut(s)	396
Cfr42I	CCGCGG	1 cut(s)	666
CseI	GACGC	3 cut(s)	221, 763, 804
Csp6I	GTAC	2 cut(s)	193, 253
CviQI	GTAC	2 cut(s)	193, 253
DdeI	CTNAG	7 cut(s)	264, 444, 477, 540, 570, 621, 807
DinI	GGCGCC	1 cut(s)	405
DpnI	GATC	5 cut(s)	35, 260, 356, 365, 383
DpnII	GATC	5 cut(s)	33, 258, 354, 363, 381
DrdI	GACNNNNNNGTC	1 cut(s)	766
DseDI	GACNNNNNNGTC	1 cut(s)	766
EaeI	YGGCCR	4 cut(s)	24, 438, 510, 666
EagI	CGGCCG	2 cut(s)	438, 666
Eam1104I	CTCTTC	2 cut(s)	192, 326
EarI	CTCTTC	2 cut(s)	192, 326
EciI	GGCGGA	1 cut(s)	98
EclXI	CGGCCG	2 cut(s)	438, 666
Eco130I	CCWWGG	4 cut(s)	126, 450, 699, 741
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	396
Eco52I	CGGCCG	2 cut(s)	438, 666
Eco81I	CCTNAGG	2 cut(s)	477, 540
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	4 cut(s)	126, 450, 699, 741
EcoT38I	GRGCYC	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	405
EheI	GGCGCC	1 cut(s)	405
ErhI	CCWWGG	4 cut(s)	126, 450, 699, 741
Esp3I	CGTCTC	3 cut(s)	32, 71, 774
FauI	CCCGC	5 cut(s)	187, 393, 571, 652, 670
FriOI	GRGCYC	1 cut(s)	135
GlaI	GCGC	2 cut(s)	405, 840
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	855
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	6 cut(s)	26, 125, 440, 512, 668, 799
HgaI	GACGC	3 cut(s)	221, 763, 804
HhaI	GCGC	2 cut(s)	406, 841
Hin1I	GRCGYC	1 cut(s)	404
Hin6I	GCGC	2 cut(s)	404, 839
HinP1I	GCGC	2 cut(s)	404, 839
HindIII	AAGCTT	2 cut(s)	311, 335
HinfI	GANTC	1 cut(s)	49
HphI	GGTGA	3 cut(s)	61, 176, 436
Hpy188I	TCNGA	6 cut(s)	159, 349, 591, 714, 789, 825
Hpy188III	TCNNGA	5 cut(s)	31, 37, 46, 59, 307
Hpy99I	CGWCG	2 cut(s)	32, 820
HpyAV	CCTTC	6 cut(s)	139, 223, 547, 771, 823, 879
HpyCH4III	ACNGT	2 cut(s)	22, 43
HpyF3I	CTNAG	7 cut(s)	264, 444, 477, 540, 570, 621, 807
Hsp92I	GRCGYC	1 cut(s)	404
HspAI	GCGC	2 cut(s)	404, 839
KasI	GGCGCC	1 cut(s)	403
KroI	GCCGGC	2 cut(s)	436, 856
KroNI	GCCGGC	2 cut(s)	438, 858
KspI	CCGCGG	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	33, 258, 354, 363, 381
LguI	GCTCTTC	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	67, 220
MalI	GATC	5 cut(s)	35, 260, 356, 365, 383
MbiI	CCGCTC	2 cut(s)	176, 182
MboI	GATC	5 cut(s)	33, 258, 354, 363, 381
MboII	GAAGA	8 cut(s)	23, 154, 209, 313, 343, 439, 442, 838
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	135
Mly113I	GGCGCC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	812
MreI	CGCCGGCG	1 cut(s)	856
MroNI	GCCGGC	2 cut(s)	436, 856
MseI	TTAA	3 cut(s)	207, 360, 615
MspA1I	CMGCKG	2 cut(s)	292, 665
MspR9I	CCNGG	3 cut(s)	108, 774, 796
MvnI	CGCG	5 cut(s)	32, 215, 257, 665, 841
NaeI	GCCGGC	2 cut(s)	438, 858
NarI	GGCGCC	1 cut(s)	404
NciI	CCSGG	3 cut(s)	108, 774, 796
NdeII	GATC	5 cut(s)	33, 258, 354, 363, 381
NgoMIV	GCCGGC	2 cut(s)	436, 856
NlaIV	GGNNCC	5 cut(s)	132, 150, 405, 822, 834
NmeAIII	GCCGAG	3 cut(s)	100, 192, 380
NmuCI	GTSAC	2 cut(s)	67, 220
NotI	GCGGCCGC	1 cut(s)	666
NruI	TCGCGA	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	2 cut(s)	438, 858
PfeI	GAWTC	1 cut(s)	49
Pfl23II	CGTACG	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	763
PfoI	TCCNGGA	1 cut(s)	772
Ple19I	CGATCG	1 cut(s)	36
PluTI	GGCGCC	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	116
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	5 cut(s)	132, 150, 405, 822, 834
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	763
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	292
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	194, 254
RsaNI	GTAC	2 cut(s)	193, 253
SacII	CCGCGG	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	207, 360, 615
Sau3AI	GATC	5 cut(s)	33, 258, 354, 363, 381
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	3 cut(s)	108, 774, 796
SduI	GDGCHC	1 cut(s)	135
SfoI	GGCGCC	1 cut(s)	405
Sfr303I	CCGCGG	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	856
SgrBI	CCGCGG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	396
SspDI	GGCGCC	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	106, 772, 794
StyI	CCWWGG	4 cut(s)	126, 450, 699, 741
TaaI	ACNGT	2 cut(s)	22, 43
TaqI	TCGA	5 cut(s)	36, 45, 245, 273, 749
TaqII	GACCGA	1 cut(s)	23
TauI	GCSGC	9 cut(s)	176, 298, 443, 533, 605, 650, 668, 671, 707
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	207, 360, 615
Tru9I	TTAA	3 cut(s)	207, 360, 615
TseFI	GTSAC	2 cut(s)	67, 220
Tsp45I	GTSAC	2 cut(s)	67, 220
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.