Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Reverse (-)

15159591 .. 15160799

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGAAAGAGTCCACCACCATCGACGTCGGCGAGCCAAGCACTGTTACCAAAAGTTCAAGCCATGTCGTAAAGGACGCGAAGAAGAAGGGCTTTGTGGCAGTCGCCTCAAGAGGTGGTGCCAAGAGAGGTTTGGCTATATTCGATTTCCTCCTCCGTTTGGCGGCCATAGCAGTCACTATTGGGGCTGCCTCTGTCATGTACACCGCCGAGGAAACTCTTCCCTTCTTTACTCAGTTCCTCCAGTTCCAAGCCGGTTACGATGACCTTCCTGCGTTTCAGTACTTTGTGATAGCCGTAGCCGTAGTCGCTAGCTATCTCGTCCTTTCACTTCCATTCTCCATCGTATCCATTGTCCGTCCACATGCTGTCGCGCCCCGGCTGATCCTCCTCATTTGCGATACTCTGGTCGTGACGCTCAACACATCAGCAGCAGCAGCGGCAGCATCAATCACCTACCTTGCACACAACGGCAACCAAAGCACCAACTGGCTCCCTATCTGTCAGCAGTTTGGAGACTTCTGCCAGAACGTTAGCACCGCGGTTGTGGCTGATTCTATCGCGATTCTCTTCTTCATCGTTCTTATCATCATCTCAGCCATCGCCCTCAAGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

206

Amino Acids

21.97

Weight (kDa)

8.46

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	43 - 190	1.9e-45	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	4 cut(s)	80, 374, 542, 563
AciI	CCGC	5 cut(s)	164, 207, 440, 540, 542
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	203, 284
AfiI	CCNNNNNNNGG	3 cut(s)	160, 163, 612
AgsI	TTSAA	1 cut(s)	60
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	5 cut(s)	188, 431, 434, 437, 443
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	445
AsuNHI	GCTAGC	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanI	GGYRCC	1 cut(s)	119
BbvI	GCAGC	5 cut(s)	175, 443, 446, 449, 455
BccI	CCATC	3 cut(s)	29, 350, 608
BceAI	ACGGC	3 cut(s)	281, 287, 487
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	7 cut(s)	165, 189, 432, 435, 438, 441, 444
BlsI	GCNGC	7 cut(s)	166, 190, 433, 436, 439, 442, 445
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	121, 494
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	455
BmtI	GCTAGC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	94, 593
BpuMI	CCSGG	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	210, 377, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 163, 612
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	244, 494
BseDI	CCNNGG	3 cut(s)	210, 377, 540
BseLI	CCNNNNNNNGG	3 cut(s)	160, 163, 612
BseMII	CTCAG	2 cut(s)	248, 609
BseNI	ACTGG	2 cut(s)	244, 494
BseRI	GAGGAG	2 cut(s)	143, 380
BseXI	GCAGC	5 cut(s)	175, 443, 446, 449, 455
Bsh1236I	CGCG	4 cut(s)	80, 374, 542, 563
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	255, 379
BslI	CCNNNNNNNGG	3 cut(s)	160, 163, 612
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	384
Bsp68I	TCGCGA	1 cut(s)	563
BspACI	CCGC	5 cut(s)	164, 207, 440, 540, 542
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	247, 608
BspFNI	CGCG	4 cut(s)	80, 374, 542, 563
BspLI	GGNNCC	2 cut(s)	121, 494
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	244, 494
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	210, 377, 540
BssMI	GATC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	225, 575
BstACI	GRCGYC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	35, 313
BstDEI	CTNAG	2 cut(s)	234, 595
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	4 cut(s)	80, 374, 542, 563
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 170, 308, 437, 440, 443, 480, 548
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	377
BstUI	CGCG	4 cut(s)	80, 374, 542, 563
BstV1I	GCAGC	5 cut(s)	175, 443, 446, 449, 455
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	563
Cac8I	GCNNGC	2 cut(s)	35, 313
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	254
Cfr42I	CCGCGG	1 cut(s)	543
CseI	GACGC	2 cut(s)	86, 424
Csp6I	GTAC	2 cut(s)	202, 283
CviAII	CATG	3 cut(s)	65, 199, 365
CviQI	GTAC	2 cut(s)	202, 283
DdeI	CTNAG	2 cut(s)	234, 595
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	225, 575
EarI	CTCTTC	2 cut(s)	225, 575
FaeI	CATG	3 cut(s)	68, 202, 368
FaiI	YATR	5 cut(s)	66, 140, 170, 200, 366
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	3 cut(s)	64, 198, 364
Fnu4HI	GCNGC	7 cut(s)	165, 189, 432, 435, 438, 441, 444
Fsp4HI	GCNGC	7 cut(s)	165, 189, 432, 435, 438, 441, 444
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	7 cut(s)	165, 189, 432, 435, 438, 441, 444
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	255, 379
HgaI	GACGC	2 cut(s)	86, 424
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	68, 202, 368
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	3 cut(s)	11, 554, 565
HpaII	CCGG	2 cut(s)	255, 379
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	3 cut(s)	15, 204, 362
Hpy188III	TCNNGA	4 cut(s)	111, 412, 562, 610
Hpy8I	GTNNAC	3 cut(s)	15, 204, 362
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	3 cut(s)	82, 235, 278
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	27, 531
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 170, 308, 437, 440, 443, 480, 548
HpyF3I	CTNAG	2 cut(s)	234, 595
HpySE526I	ACGT	2 cut(s)	27, 531
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	68, 202, 368
HspAI	GCGC	1 cut(s)	374
KspI	CCGCGG	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	7 cut(s)	257, 268, 285, 392, 392, 475, 539
Lsp1109I	GCAGC	5 cut(s)	175, 443, 446, 449, 455
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	27, 531
MaeIII	GTNAC	4 cut(s)	46, 175, 257, 412
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	94, 97, 212, 562, 565
MlyI	GAGTC	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	440, 542
MspI	CCGG	2 cut(s)	255, 379
MspR9I	CCNGG	1 cut(s)	379
MvnI	CGCG	4 cut(s)	80, 374, 542, 563
MwoI	GCNNNNNNNGC	8 cut(s)	39, 170, 308, 437, 440, 443, 480, 548
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	68, 202, 368
NlaIV	GGNNCC	2 cut(s)	121, 494
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	175, 412
NruI	TCGCGA	1 cut(s)	563
NspI	RCATGY	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	554, 565
PkrI	GCNGC	7 cut(s)	166, 190, 433, 436, 439, 442, 445
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	121, 494
RruI	TCGCGA	1 cut(s)	563
RsaI	GTAC	2 cut(s)	203, 284
RsaNI	GTAC	2 cut(s)	202, 283
SacII	CCGCGG	1 cut(s)	543
SatI	GCNGC	7 cut(s)	165, 189, 432, 435, 438, 441, 444
Sau3AI	GATC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	8 cut(s)	30, 118, 133, 270, 317, 458, 462, 534
SfaNI	GCATC	1 cut(s)	455
Sfr303I	CCGCGG	1 cut(s)	543
SgrBI	CCGCGG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	109, 608
SmoI	CTYRAG	2 cut(s)	109, 608
SsiI	CCGC	5 cut(s)	164, 207, 440, 540, 542
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	30, 534
TaqI	TCGA	2 cut(s)	24, 144
TatI	WGTACW	2 cut(s)	201, 282
TauI	GCSGC	2 cut(s)	167, 443
TfiI	GAWTC	2 cut(s)	554, 565
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	175, 412
TseI	GCWGC	5 cut(s)	188, 431, 434, 437, 443
Tsp45I	GTSAC	2 cut(s)	175, 412
TspDTI	ATGAA	1 cut(s)	565
TspGWI	ACGGA	2 cut(s)	146, 347
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	28
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.