Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

38854305 .. 38855214

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATGATCATGACAAGGGAGCTGGGATGAAGAAGGGGGTTGCTGTAATCGACTTCATTCTACGGCTAGGTGCCACGGCAGCTGCTCTAGGCGCCACCGTCACCATGGCATCCAGCGAGCAGACTCTTCCTTTCTTCACACAGTTCTTTCAATTTCAAGCCGGTTATGACGGCTTGCCCACTTTCACGTACGTGCATCTAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTTTGCCCTTCTCCATAGTAACCATTATCCGTCCACTGGCGCTTACTCTGAACACTTCAAGTGCCGCCGCTGCGGCTGCCATAGTCTACTTGGCCCACAATGGGAACTCCGATGCAAATTGGCTTGCTATCTGCCAACAGTTCGGTGATTTCTGCCGGCAATCTAGCGGGGCTGTGGTTTCAGCATTCGTTGCAGTTGTTATCTTCACTGTGTTGATTATGCCGTCTGCTAGTGCCCTCCGAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

161

Amino Acids

16.98

Weight (kDa)

7.85

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	12 - 145	6.9e-32	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 92
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	4 cut(s)	300, 303, 308, 402
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	271, 336
AgsI	TTSAA	3 cut(s)	152, 158, 294
AjnI	CCWGG	1 cut(s)	225
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	23, 83, 482
AluI	AGCT	3 cut(s)	23, 83, 482
AoxI	GGCC	2 cut(s)	207, 327
ApeKI	GCWGC	4 cut(s)	80, 83, 305, 311
AspLEI	GCGC	2 cut(s)	95, 277
AspS9I	GGNCC	2 cut(s)	229, 328
AsuHPI	GGTGA	2 cut(s)	94, 392
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	71, 92
BbvI	GCAGC	4 cut(s)	70, 92, 292, 298
BceAI	ACGGC	4 cut(s)	80, 93, 187, 442
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	5 cut(s)	68, 89, 200, 399, 465
BfoI	RGCGCY	2 cut(s)	96, 278
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	7 cut(s)	81, 84, 300, 303, 306, 309, 312
BlsI	GCNGC	7 cut(s)	82, 85, 301, 304, 307, 310, 313
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 328
BmiI	GGNNCC	2 cut(s)	73, 94
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	3 cut(s)	119, 205, 337
BsaAI	YACGTR	2 cut(s)	189, 193
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 336
Bse118I	RCCGGY	2 cut(s)	161, 390
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	75, 105
BseGI	GGATG	2 cut(s)	33, 110
BseLI	CCNNNNNNNGG	2 cut(s)	271, 336
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	70, 92, 292, 298
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	209, 329
BshNI	GGYRCC	2 cut(s)	71, 92
BsiSI	CCGG	2 cut(s)	162, 391
BsiWI	CGTACG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	271, 336
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	209, 329
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	4 cut(s)	300, 303, 308, 402
BspANI	GGCC	2 cut(s)	209, 329
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	73, 94
BspQI	GCTCTTC	1 cut(s)	472
BspT107I	GGYRCC	2 cut(s)	71, 92
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	161, 390
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	2 cut(s)	161, 390
BssECI	CCNNGG	2 cut(s)	75, 105
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	4 cut(s)	100, 144, 375, 445
Bst6I	CTCTTC	2 cut(s)	132, 472
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	2 cut(s)	189, 193
BstC8I	GCNNGC	4 cut(s)	119, 176, 360, 392
BstDSI	CCRYGG	2 cut(s)	75, 105
BstF5I	GGATG	2 cut(s)	33, 110
BstH2I	RGCGCY	2 cut(s)	96, 278
BstHHI	GCGC	2 cut(s)	95, 277
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 92, 305, 308, 311, 425
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	70, 92, 292, 298
BsuRI	GGCC	2 cut(s)	209, 329
BtgI	CCRYGG	2 cut(s)	75, 105
BtsCI	GGATG	2 cut(s)	33, 110
BtsIMutI	CAGTG	2 cut(s)	269, 441
Cac8I	GCNNGC	4 cut(s)	119, 176, 360, 392
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	2 cut(s)	95, 277
Cfr10I	RCCGGY	2 cut(s)	161, 390
Cfr13I	GGNCC	2 cut(s)	229, 328
CsiI	ACCWGGT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	5, 11, 106
CviQI	GTAC	1 cut(s)	190
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	132, 472
EarI	CTCTTC	2 cut(s)	132, 472
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	8, 14, 109
FaiI	YATR	8 cut(s)	6, 12, 107, 168, 212, 251, 317, 455
FatI	CATG	3 cut(s)	4, 10, 105
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	7 cut(s)	81, 84, 300, 303, 306, 309, 312
FokI	GGATG	2 cut(s)	40, 97
Fsp4HI	GCNGC	7 cut(s)	81, 84, 300, 303, 306, 309, 312
FspBI	CTAG	5 cut(s)	68, 89, 200, 399, 465
GlaI	GCGC	2 cut(s)	94, 276
GluI	GCNGC	7 cut(s)	81, 84, 300, 303, 306, 309, 312
GsaI	CCCAGC	1 cut(s)	27
HaeII	RGCGCY	2 cut(s)	96, 278
HaeIII	GGCC	2 cut(s)	209, 329
HapII	CCGG	2 cut(s)	162, 391
HhaI	GCGC	2 cut(s)	95, 277
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	8, 14, 109
Hin6I	GCGC	2 cut(s)	93, 275
HinP1I	GCGC	2 cut(s)	93, 275
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	162, 391
HphI	GGTGA	2 cut(s)	94, 392
Hpy166II	GTNNAC	2 cut(s)	269, 322
Hpy188I	TCNGA	3 cut(s)	285, 346, 476
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	269, 322
HpyAV	CCTTC	2 cut(s)	28, 253
HpyCH4III	ACNGT	4 cut(s)	100, 144, 375, 445
HpyCH4IV	ACGT	2 cut(s)	188, 192
HpyCH4V	TGCA	4 cut(s)	4, 196, 350, 428
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 92, 305, 308, 311, 425
HpySE526I	ACGT	2 cut(s)	188, 192
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	8, 14, 109
HspAI	GCGC	2 cut(s)	93, 275
KasI	GGCGCC	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	9, 127, 175, 212, 239, 257, 404
Lsp1109I	GCAGC	4 cut(s)	70, 92, 292, 298
LweI	GCATC	3 cut(s)	119, 205, 337
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	5 cut(s)	68, 89, 200, 399, 465
MaeII	ACGT	2 cut(s)	188, 192
MaeIII	GTNAC	2 cut(s)	100, 253
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	43, 119, 127, 430
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	152, 352
MluNI	TGGCCA	1 cut(s)	209
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	242, 482
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	484
MslI	CAYNNNNRTG	2 cut(s)	9, 191
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	2 cut(s)	83, 305
MspI	CCGG	2 cut(s)	162, 391
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	6 cut(s)	80, 92, 305, 308, 311, 425
NaeI	GCCGGC	1 cut(s)	392
NarI	GGCGCC	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	3 cut(s)	8, 14, 109
NlaIV	GGNNCC	2 cut(s)	73, 94
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	472
PctI	GAATGC	1 cut(s)	419
PdiI	GCCGGC	1 cut(s)	392
Pfl23II	CGTACG	1 cut(s)	189
PkrI	GCNGC	7 cut(s)	82, 85, 301, 304, 307, 310, 313
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	2 cut(s)	189, 193
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	73, 94
PspPI	GGNCC	2 cut(s)	229, 328
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	9, 191
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	7 cut(s)	81, 84, 300, 303, 306, 309, 312
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	229, 328
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	7 cut(s)	25, 73, 85, 191, 195, 228, 484
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	3 cut(s)	119, 205, 337
SfoI	GGCGCC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	9, 191
Sse9I	AATT	2 cut(s)	152, 352
SsiI	CCGC	4 cut(s)	300, 303, 308, 402
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	5 cut(s)	68, 89, 200, 399, 465
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	100, 144, 375, 445
TaiI	ACGT	2 cut(s)	191, 195
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	152, 352
TauI	GCSGC	3 cut(s)	302, 305, 311
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TscAI	CASTG	2 cut(s)	276, 448
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	80, 83, 305, 311
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	44, 46
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	276, 448
VpaK11BI	GGWCC	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 322
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	5 cut(s)	68, 89, 200, 399, 465
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.