Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

37728252 .. 37729288

Gene Structure 1037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATAGATCGAGAAGTGATTCGACTGCAATCAACATTCAGCCAGAGTCATCATCGAGAAGTAGGCAGTTTGCTGCCAAAGGAGAAGCATATCATGTGATGAGGGTACTAGCTGCTGATCCCAAGCATAAGGGGGTTGCTGTAATCGACTTCATTCTACGGCTAGGTGCCACGGCAGCTGCTCTAGGCGCCACCGTCACCATGGCATCCAGCGAGCAGACTCTTCCTTTCTTCACACAGTTCTTTCAATTTCAAGCCGGTTATGACGGCTTGCCCACTTTCACGTACCTAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTTTGCCCTTCTCCATAGTAACCATTATCCGTCCACTGGCGCTTACTCTGAACACTTCAAGTGCCGCCGCTGCGGCTGCCATAGTCTACTTGGCCCACAATGGGAACTCCGATGCAAATTGGCTTGCTATCTGCCAACAGTTCGGTGATTTCTGCCGGCAATCTAGCGGGGCTGTGGTTTCAGCATTCGTTGCAGTTGTTATCTTCACTGTGTTGATTATGCCGTCTGCTAGTGCCCTCCGAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

191

Amino Acids

20.32

Weight (kDa)

9.39

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	44 - 175	2.1e-29	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 188
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	4 cut(s)	390, 393, 398, 492
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	108, 287
AfiI	CCNNNNNNNGG	3 cut(s)	295, 361, 426
AgsI	TTSAA	3 cut(s)	248, 254, 384
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	113, 179, 572
AluI	AGCT	3 cut(s)	113, 179, 572
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	297, 417
ApeKI	GCWGC	6 cut(s)	74, 113, 176, 179, 395, 401
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	191, 367
AspS9I	GGNCC	2 cut(s)	319, 418
AsuHPI	GGTGA	2 cut(s)	190, 482
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	2 cut(s)	167, 188
BbvI	GCAGC	6 cut(s)	61, 100, 166, 188, 382, 388
BceAI	ACGGC	4 cut(s)	176, 189, 283, 532
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	6 cut(s)	110, 164, 185, 290, 489, 555
BfoI	RGCGCY	2 cut(s)	192, 368
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	9 cut(s)	75, 114, 177, 180, 390, 393, 396, 399, 402
BlsI	GCNGC	9 cut(s)	76, 115, 178, 181, 391, 394, 397, 400, 403
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	319, 418
BmiI	GGNNCC	2 cut(s)	169, 190
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	215, 427
BsaAI	YACGTR	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 361, 426
Bse118I	RCCGGY	2 cut(s)	257, 480
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	171, 201
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	3 cut(s)	295, 361, 426
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	6 cut(s)	61, 100, 166, 188, 382, 388
BshFI	GGCC	2 cut(s)	299, 419
BshNI	GGYRCC	2 cut(s)	167, 188
BsiSI	CCGG	2 cut(s)	258, 481
BslI	CCNNNNNNNGG	3 cut(s)	295, 361, 426
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	299, 419
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	2 cut(s)	8, 118
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	4 cut(s)	390, 393, 398, 492
BspANI	GGCC	2 cut(s)	299, 419
BspLI	GGNNCC	2 cut(s)	169, 190
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	562
BspT107I	GGYRCC	2 cut(s)	167, 188
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	2 cut(s)	257, 480
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	2 cut(s)	257, 480
BssECI	CCNNGG	2 cut(s)	171, 201
BssMI	GATC	2 cut(s)	8, 118
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	4 cut(s)	196, 240, 465, 535
Bst6I	CTCTTC	2 cut(s)	228, 562
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	215, 272, 450, 482
BstDSI	CCRYGG	2 cut(s)	171, 201
BstF5I	GGATG	1 cut(s)	206
BstH2I	RGCGCY	2 cut(s)	192, 368
BstHHI	GCGC	2 cut(s)	191, 367
BstKTI	GATC	2 cut(s)	11, 121
BstMBI	GATC	2 cut(s)	8, 118
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 188, 395, 398, 401, 515
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	6 cut(s)	61, 100, 166, 188, 382, 388
BsuRI	GGCC	2 cut(s)	299, 419
BtgI	CCRYGG	2 cut(s)	171, 201
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	359, 531
Cac8I	GCNNGC	4 cut(s)	215, 272, 450, 482
CfoI	GCGC	2 cut(s)	191, 367
Cfr10I	RCCGGY	2 cut(s)	257, 480
Cfr13I	GGNCC	2 cut(s)	319, 418
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	107, 286
CviAII	CATG	2 cut(s)	95, 202
CviQI	GTAC	2 cut(s)	107, 286
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	2 cut(s)	10, 120
DpnII	GATC	2 cut(s)	8, 118
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	228, 562
EarI	CTCTTC	2 cut(s)	228, 562
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	98, 205
FaiI	YATR	9 cut(s)	91, 96, 129, 203, 264, 302, 341, 407, 545
FatI	CATG	2 cut(s)	94, 201
FauI	CCCGC	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	9 cut(s)	75, 114, 177, 180, 390, 393, 396, 399, 402
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	9 cut(s)	75, 114, 177, 180, 390, 393, 396, 399, 402
FspBI	CTAG	6 cut(s)	110, 164, 185, 290, 489, 555
GlaI	GCGC	2 cut(s)	190, 366
GluI	GCNGC	9 cut(s)	75, 114, 177, 180, 390, 393, 396, 399, 402
HaeII	RGCGCY	2 cut(s)	192, 368
HaeIII	GGCC	2 cut(s)	299, 419
HapII	CCGG	2 cut(s)	258, 481
HhaI	GCGC	2 cut(s)	191, 367
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	98, 205
Hin6I	GCGC	2 cut(s)	189, 365
HinP1I	GCGC	2 cut(s)	189, 365
HinfI	GANTC	3 cut(s)	20, 47, 220
HpaII	CCGG	2 cut(s)	258, 481
HphI	GGTGA	2 cut(s)	190, 482
Hpy166II	GTNNAC	2 cut(s)	359, 412
Hpy188I	TCNGA	3 cut(s)	375, 436, 566
Hpy188III	TCNNGA	2 cut(s)	12, 57
Hpy8I	GTNNAC	2 cut(s)	359, 412
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	196, 240, 465, 535
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	29, 440, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 188, 395, 398, 401, 515
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	98, 205
HspAI	GCGC	2 cut(s)	189, 365
KasI	GGCGCC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Kzo9I	GATC	2 cut(s)	8, 118
LguI	GCTCTTC	1 cut(s)	562
LpnPI	CCDG	7 cut(s)	57, 223, 271, 302, 329, 347, 494
Lsp1109I	GCAGC	6 cut(s)	61, 100, 166, 188, 382, 388
LweI	GCATC	2 cut(s)	215, 427
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	6 cut(s)	110, 164, 185, 290, 489, 555
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	196, 343
MalI	GATC	2 cut(s)	10, 120
MboI	GATC	2 cut(s)	8, 118
MboII	GAAGA	3 cut(s)	215, 223, 520
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	248, 442
MluNI	TGGCCA	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	56, 214
MnlI	CCTC	3 cut(s)	96, 332, 572
Mox20I	TGGCCA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	574
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	2 cut(s)	179, 395
MspI	CCGG	2 cut(s)	258, 481
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	176, 188, 395, 398, 401, 515
NaeI	GCCGGC	1 cut(s)	482
NarI	GGCGCC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	8, 118
NgoMIV	GCCGGC	1 cut(s)	480
NlaIII	CATG	2 cut(s)	98, 205
NlaIV	GGNNCC	2 cut(s)	169, 190
NmuCI	GTSAC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	562
PctI	GAATGC	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	9 cut(s)	76, 115, 178, 181, 391, 394, 397, 400, 403
PleI	GAGTC	2 cut(s)	55, 214
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	2 cut(s)	55, 214
Ppu21I	YACGTR	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	169, 190
PspPI	GGNCC	2 cut(s)	319, 418
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	108, 287
RsaNI	GTAC	2 cut(s)	107, 286
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	1 cut(s)	574
SatI	GCNGC	9 cut(s)	75, 114, 177, 180, 390, 393, 396, 399, 402
Sau3AI	GATC	2 cut(s)	8, 118
Sau96I	GGNCC	2 cut(s)	319, 418
SchI	GAGTC	2 cut(s)	56, 214
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	7 cut(s)	115, 169, 181, 287, 291, 318, 574
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	215, 427
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	248, 442
SsiI	CCGC	4 cut(s)	390, 393, 398, 492
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	6 cut(s)	110, 164, 185, 290, 489, 555
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	196, 240, 465, 535
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	4 cut(s)	11, 23, 56, 147
TasI	AATT	2 cut(s)	248, 442
TauI	GCSGC	3 cut(s)	392, 395, 401
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	574
Tru9I	TTAA	1 cut(s)	574
TscAI	CASTG	2 cut(s)	366, 538
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	6 cut(s)	74, 113, 176, 179, 395, 401
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	17, 142
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	366, 538
VpaK11BI	GGWCC	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 412
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	6 cut(s)	110, 164, 185, 290, 489, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.