Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Reverse (-)

29216788 .. 29219094

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAATAGATCGAGAAGTGATTCGACTGCAATCAACATTCAGCCAGAGTCATCATCGAGAAGTGCCCCGGCAGCTGCTCTAGGCGCCACCGTCACCATGGCATCCAGCGAGCAGACTCTTCCTTTCTTCACACAGTTCTTTCAATTTCAAGCCGGTTATGACGACTTGCCCACTTTCACGTTTTTCGTGATAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTTTGCCCTTCTCCATAGTAACCATTATCCGTCCACTATTAGTTGCTCCGAGGCTTCTCTTGCTTATTTTCGACACTCTGGCGCTTACTCTGAACACTTCAAGTGCCGCCGCTGCGGCTGCTATAGTTTACTTGGCCCACAATGGAAACTCCGATGCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

130

Amino Acids

13.72

Weight (kDa)

4.94

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	24 - 128	1e-26	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	3 cut(s)	333, 336, 341
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	143, 149, 327
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AoxI	GGCC	2 cut(s)	198, 360
ApeKI	GCWGC	4 cut(s)	71, 74, 338, 344
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	86, 310
AspS9I	GGNCC	2 cut(s)	220, 361
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	61, 83, 325, 331
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	2 cut(s)	87, 311
BglI	GCCNNNNNGGC	1 cut(s)	341
BisI	GCNGC	7 cut(s)	72, 75, 333, 336, 339, 342, 345
BlsI	GCNGC	7 cut(s)	73, 76, 334, 337, 340, 343, 346
Bme1390I	CCNGG	2 cut(s)	68, 218
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	220, 361
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	68, 218
BmsI	GCATC	2 cut(s)	110, 370
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	66, 96, 275
Bse118I	RCCGGY	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	66, 96, 275
BseGI	GGATG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	61, 83, 325, 331
BshFI	GGCC	2 cut(s)	200, 362
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	68, 153
BsnI	GGCC	2 cut(s)	200, 362
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	3 cut(s)	333, 336, 341
BspANI	GGCC	2 cut(s)	200, 362
BspLI	GGNNCC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	66, 96, 275
BssMI	GATC	1 cut(s)	8
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	91, 135
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	101
BstH2I	RGCGCY	2 cut(s)	87, 311
BstHHI	GCGC	2 cut(s)	86, 310
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 83, 286, 338, 341, 344
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	66, 216
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	61, 83, 325, 331
BsuRI	GGCC	2 cut(s)	200, 362
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	86, 310
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	220, 361
CsiI	ACCWGGT	1 cut(s)	216
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	43, 74, 152, 200, 213, 280, 344, 362
CviKI_1	RGCY	8 cut(s)	43, 74, 152, 200, 213, 280, 344, 362
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	98, 159, 203, 242, 350
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	72, 75, 333, 336, 339, 342, 345
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	7 cut(s)	72, 75, 333, 336, 339, 342, 345
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	85, 309
GluI	GCNGC	7 cut(s)	72, 75, 333, 336, 339, 342, 345
HaeII	RGCGCY	2 cut(s)	87, 311
HaeIII	GGCC	2 cut(s)	200, 362
HapII	CCGG	2 cut(s)	68, 153
HhaI	GCGC	2 cut(s)	86, 310
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	2 cut(s)	84, 308
HinP1I	GCGC	2 cut(s)	84, 308
HinfI	GANTC	3 cut(s)	20, 47, 115
HpaII	CCGG	2 cut(s)	68, 153
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	260, 355
Hpy188I	TCNGA	3 cut(s)	276, 318, 379
Hpy188III	TCNNGA	3 cut(s)	12, 57, 187
Hpy8I	GTNNAC	2 cut(s)	260, 355
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	91, 135
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	29, 383
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 83, 286, 338, 341, 344
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	84, 308
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	57, 81, 118, 166, 203, 230, 290
Lsp1109I	GCAGC	4 cut(s)	61, 83, 325, 331
LweI	GCATC	2 cut(s)	110, 370
MabI	ACCWGGT	1 cut(s)	216
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	91, 244
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	110, 118
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	143, 385
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	56, 109
MnlI	CCTC	2 cut(s)	233, 270
Mox20I	TGGCCA	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	74, 338
MspI	CCGG	2 cut(s)	68, 153
MspR9I	CCNGG	2 cut(s)	68, 218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	71, 83, 286, 338, 341, 344
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	73, 76, 334, 337, 340, 343, 346
PleI	GAGTC	2 cut(s)	55, 109
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	55, 109
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	220, 361
PvuII	CAGCTG	1 cut(s)	74
SatI	GCNGC	7 cut(s)	72, 75, 333, 336, 339, 342, 345
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	2 cut(s)	220, 361
SchI	GAGTC	2 cut(s)	56, 109
ScrFI	CCNGG	2 cut(s)	68, 218
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	3 cut(s)	76, 182, 219
SexAI	ACCWGGT	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	110, 370
SfcI	CTRYAG	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	143, 385
SsiI	CCGC	3 cut(s)	333, 336, 341
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	66, 216
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	91, 135
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	4 cut(s)	11, 23, 56, 297
TasI	AATT	2 cut(s)	143, 385
TauI	GCSGC	3 cut(s)	335, 338, 344
TfiI	GAWTC	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	71, 74, 338, 344
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.