Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

40188121 .. 40189055

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24909

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGGGTACTAGCTGCTGATCCCAAGCATGATCATGACAAGGGAGCTGGGATGAAGAAGGGGGTTGCTGTAATCGACTTCATTCTACGGCTAGGTGCCACGGCAGCTGCTCTAGGTGCCACCGTCACCATGGCATCCAGCGAGCAGACTCTTCCTTTCTTCACACAGTTCTTTCAATTTCAAGCCGGTTATGAGTTTTTCGTGATAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTTTGCCCTTCTCCATACTGGCGCTTACTCTGAACACTTCAAGTGCCGCCGCTGAGGCTGCCATAGTTTACTTGGCCCACAATGGGAACTCCGATGCAAATTGGCTTGCTATCTGCCAACAGTTCGGTGATTTCTGCCGGCAATCTAGCGGGGCTGTGGTTTCAGCATTCGTTGCAGTTGTTATCTTCACTGTGTTGATTATGCTGTCTGCTAGTGCCCTCCGAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

157

Amino Acids

16.62

Weight (kDa)

6.81

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	20 - 90	4.8e-13	Casparian strip membrane protein domain
CASP_dom	PF04535	89 - 141	2.4e-15	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 116
AciI	CCGC	3 cut(s)	288, 291, 390
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	176, 182, 282
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	14, 47, 107, 470
AluI	AGCT	4 cut(s)	14, 47, 107, 470
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	213, 315
ApeKI	GCWGC	4 cut(s)	14, 104, 107, 299
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	235, 316
AsuHPI	GGTGA	2 cut(s)	118, 380
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	95, 116
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	94, 116, 286
BceAI	ACGGC	2 cut(s)	104, 117
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	5 cut(s)	11, 92, 113, 387, 453
BfoI	RGCGCY	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	6 cut(s)	15, 105, 108, 288, 291, 300
BlsI	GCNGC	6 cut(s)	16, 106, 109, 289, 292, 301
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	235, 316
BmiI	GGNNCC	2 cut(s)	97, 118
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	143, 325
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	2 cut(s)	185, 378
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	99, 129
BseGI	GGATG	2 cut(s)	57, 134
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	94, 116, 286
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	215, 317
BshNI	GGYRCC	2 cut(s)	95, 116
BsiSI	CCGG	2 cut(s)	186, 379
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	215, 317
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	19, 31
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	288, 291, 390
BspANI	GGCC	2 cut(s)	215, 317
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	97, 118
BspPI	GGATC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	460
BspT107I	GGYRCC	2 cut(s)	95, 116
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	185, 378
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	2 cut(s)	185, 378
BssECI	CCNNGG	2 cut(s)	99, 129
BssMI	GATC	2 cut(s)	19, 31
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	124, 168, 363, 433
Bst6I	CTCTTC	2 cut(s)	156, 460
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	143, 348, 380
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	99, 129
BstF5I	GGATG	2 cut(s)	57, 134
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	22, 34
BstMBI	GATC	2 cut(s)	19, 31
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 116, 296, 299, 413
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	94, 116, 286
BsuRI	GGCC	2 cut(s)	215, 317
BtgI	CCRYGG	2 cut(s)	99, 129
BtsCI	GGATG	2 cut(s)	57, 134
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	143, 348, 380
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	2 cut(s)	185, 378
Cfr13I	GGNCC	2 cut(s)	235, 316
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	29, 35, 130
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	21, 33
DpnII	GATC	2 cut(s)	19, 31
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	156, 460
EarI	CTCTTC	2 cut(s)	156, 460
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	32, 38, 133
FaiI	YATR	8 cut(s)	30, 36, 131, 192, 218, 257, 305, 443
FatI	CATG	3 cut(s)	28, 34, 129
FauI	CCCGC	1 cut(s)	383
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	6 cut(s)	15, 105, 108, 288, 291, 300
FokI	GGATG	2 cut(s)	64, 121
Fsp4HI	GCNGC	6 cut(s)	15, 105, 108, 288, 291, 300
FspBI	CTAG	5 cut(s)	11, 92, 113, 387, 453
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	15, 105, 108, 288, 291, 300
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	215, 317
HapII	CCGG	2 cut(s)	186, 379
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	32, 38, 133
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	186, 379
HphI	GGTGA	2 cut(s)	118, 380
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	273, 334, 464
Hpy188III	TCNNGA	2 cut(s)	35, 202
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	52, 259
HpyCH4III	ACNGT	4 cut(s)	124, 168, 363, 433
HpyCH4V	TGCA	2 cut(s)	338, 416
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 116, 296, 299, 413
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	32, 38, 133
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	19, 31
LguI	GCTCTTC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	33, 151, 199, 218, 245, 245, 392
Lsp1109I	GCAGC	3 cut(s)	94, 116, 286
LweI	GCATC	2 cut(s)	143, 325
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	5 cut(s)	11, 92, 113, 387, 453
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	21, 33
MboI	GATC	2 cut(s)	19, 31
MboII	GAAGA	4 cut(s)	67, 143, 151, 418
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	176, 340
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	248, 289, 470
Mox20I	TGGCCA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	2 cut(s)	107, 293
MspI	CCGG	2 cut(s)	186, 379
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	104, 116, 296, 299, 413
NaeI	GCCGGC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	19, 31
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	32, 38, 133
NlaIV	GGNNCC	2 cut(s)	97, 118
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	460
PctI	GAATGC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	16, 106, 109, 289, 292, 301
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	97, 118
PspPI	GGNCC	2 cut(s)	235, 316
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	6 cut(s)	15, 105, 108, 288, 291, 300
Sau3AI	GATC	2 cut(s)	19, 31
Sau96I	GGNCC	2 cut(s)	235, 316
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	7 cut(s)	16, 49, 97, 109, 118, 234, 472
SexAI	ACCWGGT	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	143, 325
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	176, 340
SsiI	CCGC	3 cut(s)	288, 291, 390
SspMI	CTAG	5 cut(s)	11, 92, 113, 387, 453
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	124, 168, 363, 433
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	176, 340
TauI	GCSGC	2 cut(s)	290, 293
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	14, 104, 107, 299
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	68, 70
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 310
XspI	CTAG	5 cut(s)	11, 92, 113, 387, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.