Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

3638178 .. 3639348

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGAACGAATCTACCTTCATTGATGTCCCTGCAGAATCCAGCTCAGCCATGAAAGGCAAAGCTCCTCTAATCGGTGTAGCAAGAGACCACACTACTAGTGGCTCAGGTGGATACAACAGAGGACTCGCCATCTTTGACTTCCTCCTCCGTTTAGCTGCCATTGTTGCAGCTTTAGCTGCTGCCGCCACGATGGGAACAAGCGACGAGACTCTTCCCTTCTTCACACAGTTCTTACAGTTCGAAGCTAGCTACGACGATCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCCCTTGTAGGAGGATATCTCGTTCTGTCTCTTCCAATCTCCGTCGTCACAATCCTTCGCCCTCTCGCCACCGCCCCAAGACTCCTCTTGCTCGTTCTTGACACTGGGGTCCTGGCGTTGAACACGGCGGCTGCATCATCGGCGGCAGCAATATCATATCTAGCACACAGTGGTAACCAGAACACGAACTGGCTCCCCATTTGCCAACAGTTTGGAGACTTCTGTCAAAAATCCAGCGGAGCTGTTGTCTCTGCCTTTGTCTCCGTCGTATTCTTCACCATCCTCGTTGTCATCTCCGGCGTCGCTCTGAAAAGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

204

Amino Acids

21.48

Weight (kDa)

6.25

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	41 - 189	5.9e-46	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AciI	CCGC	5 cut(s)	186, 366, 422, 437, 531
AcyI	GRCGYC	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	405
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	8 cut(s)	45, 65, 158, 173, 179, 248, 252, 536
AluI	AGCT	8 cut(s)	45, 65, 158, 173, 179, 248, 252, 536
Alw26I	GTCTC	6 cut(s)	81, 203, 327, 504, 547, 559
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	6 cut(s)	158, 170, 179, 182, 425, 440
AspS9I	GGNCC	2 cut(s)	295, 403
AsuHPI	GGTGA	1 cut(s)	562
AsuII	TTCGAA	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	403
BbvI	GCAGC	6 cut(s)	145, 166, 169, 182, 412, 452
BccI	CCATC	3 cut(s)	140, 187, 581
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	107
BcoDI	GTCTC	6 cut(s)	81, 203, 327, 504, 547, 559
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	3 cut(s)	99, 249, 455
BfmI	CTRYAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	9 cut(s)	159, 171, 180, 183, 186, 423, 426, 438, 441
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	9 cut(s)	160, 172, 181, 184, 187, 424, 427, 439, 442
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	295, 403
BmiI	GGNNCC	2 cut(s)	404, 488
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	437
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	408
BoxI	GACNNNNGTC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	297, 329
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	274, 403, 488
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	60, 120
BseNI	ACTGG	3 cut(s)	274, 403, 488
BseRI	GAGGAG	3 cut(s)	57, 137, 368
BseXI	GCAGC	6 cut(s)	145, 166, 169, 182, 412, 452
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	6 cut(s)	81, 203, 327, 504, 547, 559
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	5 cut(s)	186, 366, 422, 437, 531
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	59, 119
BspLI	GGNNCC	2 cut(s)	404, 488
BspMAI	CTGCAG	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	274, 403, 488
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	231, 240, 464, 504
Bst6I	CTCTTC	2 cut(s)	219, 330
BstACI	GRCGYC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	46, 106
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	573
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	6 cut(s)	81, 203, 327, 504, 547, 559
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 176, 179, 185, 434
BstNI	CCWGG	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	516
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	6 cut(s)	145, 166, 169, 182, 412, 452
BstXI	CCANNNNNNTGG	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	396, 469
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	295, 403
CseI	GACGC	1 cut(s)	583
CviAII	CATG	2 cut(s)	52, 292
DdeI	CTNAG	2 cut(s)	46, 106
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraIII	CACNNNGTG	1 cut(s)	464
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	219, 330
EarI	CTCTTC	2 cut(s)	219, 330
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	403
Eco91I	GGTNACC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	55, 295
FaiI	YATR	3 cut(s)	53, 293, 451
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	51, 291
Fnu4HI	GCNGC	9 cut(s)	159, 171, 180, 183, 186, 423, 426, 438, 441
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	9 cut(s)	159, 171, 180, 183, 186, 423, 426, 438, 441
FspBI	CTAG	3 cut(s)	99, 249, 455
GluI	GCNGC	9 cut(s)	159, 171, 180, 183, 186, 423, 426, 438, 441
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	2 cut(s)	55, 295
HinfI	GANTC	5 cut(s)	11, 38, 126, 211, 375
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	603
Hpy188III	TCNNGA	1 cut(s)	392
Hpy99I	CGWCG	5 cut(s)	209, 260, 341, 563, 599
HpyAV	CCTTC	3 cut(s)	28, 229, 359
HpyCH4III	ACNGT	4 cut(s)	231, 240, 464, 504
HpyCH4V	TGCA	3 cut(s)	35, 170, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 176, 179, 185, 434
HpyF3I	CTNAG	2 cut(s)	46, 106
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	55, 295
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	70, 492, 533
Lsp1109I	GCAGC	6 cut(s)	145, 166, 169, 182, 412, 452
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	3 cut(s)	99, 249, 455
MaeIII	GTNAC	2 cut(s)	340, 467
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	5 cut(s)	16, 206, 214, 317, 559
MlyI	GAGTC	3 cut(s)	120, 205, 369
MnlI	CCTC	8 cut(s)	78, 116, 155, 158, 299, 366, 389, 587
MspA1I	CMGCKG	1 cut(s)	531
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	5 cut(s)	167, 176, 179, 185, 434
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	259
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	55, 295
NlaIV	GGNNCC	2 cut(s)	404, 488
NmuCI	GTSAC	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	11, 38
PkrI	GCNGC	9 cut(s)	160, 172, 181, 184, 187, 424, 427, 439, 442
PleI	GAGTC	3 cut(s)	120, 205, 369
PpsI	GAGTC	3 cut(s)	120, 205, 369
PpuMI	RGGWCCY	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	404, 488
PspPI	GGNCC	2 cut(s)	295, 403
PspPPI	RGGWCCY	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	37
SatI	GCNGC	9 cut(s)	159, 171, 180, 183, 186, 423, 426, 438, 441
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	295, 403
SchI	GAGTC	3 cut(s)	120, 205, 369
ScrFI	CCNGG	1 cut(s)	407
SfaNI	GCATC	1 cut(s)	437
SfcI	CTRYAG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	403
SpeI	ACTAGT	1 cut(s)	98
SsiI	CCGC	5 cut(s)	186, 366, 422, 437, 531
SspMI	CTAG	3 cut(s)	99, 249, 455
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	231, 240, 464, 504
TaqI	TCGA	1 cut(s)	243
TauI	GCSGC	3 cut(s)	188, 425, 440
TfiI	GAWTC	2 cut(s)	11, 38
TscAI	CASTG	2 cut(s)	403, 469
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	6 cut(s)	158, 170, 179, 182, 425, 440
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	10, 17, 68
TspGWI	ACGGA	3 cut(s)	140, 325, 547
TspRI	CASTG	2 cut(s)	403, 469
VpaK11BI	GGWCC	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	3 cut(s)	99, 249, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.