Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

1877134 .. 1878324

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGTCATCAAAGGCAAAGCTCCTCTCCTCGGTTTAGCCAGAGACCACACTGGCTCTGGAGGTTACAAGAGAGGCCTTTCCATTTTCGATTTCCTTCTCCGTTTAGCTGCCATTGTAGCTGCCTTAGCTGCTGCTGCCACAATGGGAACTAGTGACGAGACACTCCCTTTCTTCACTCAGTTTTTGCAGTTCGAAGCTAGCTACGATGATCTTCCAACTTTCCAGTTCTTTGTCGTTGCCATTGCAATAGTTGCAGGTTACCTTGTCCTGTCACTTCCCTTCTCAGTCGTCACAATTGTTCGTCCTCTAGCCGTCGCTCCGAGACTTCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTTTGGACACTGCAGCTGCTTCCGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGGCTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTGGTTTCTGCCTTTGCCTCTGTCACCTTTTTAGCCATCCTTGTCGTTATCTCCGGTGTTTCTCTCAAACGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

202

Amino Acids

21.11

Weight (kDa)

6.04

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	39 - 186	1.2e-45	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	525
AccII	CGCG	1 cut(s)	428
AciI	CCGC	5 cut(s)	395, 426, 428, 434, 525
AfiI	CCNNNNNNNGG	1 cut(s)	74
AhlI	ACTAGT	1 cut(s)	194
AluBI	AGCT	9 cut(s)	45, 65, 152, 164, 173, 242, 246, 419, 530
AluI	AGCT	9 cut(s)	45, 65, 152, 164, 173, 242, 246, 419, 530
Alw26I	GTCTC	3 cut(s)	81, 197, 361
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	8 cut(s)	152, 164, 173, 176, 179, 416, 419, 431
AsuHPI	GGTGA	1 cut(s)	547
AsuII	TTCGAA	1 cut(s)	237
AsuNHI	GCTAGC	1 cut(s)	242
BbvI	GCAGC	8 cut(s)	139, 151, 160, 163, 166, 406, 428, 443
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	2 cut(s)	5, 341
BcoDI	GTCTC	3 cut(s)	81, 197, 361
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	42, 195, 243, 353
BfmI	CTRYAG	3 cut(s)	33, 414, 438
BfuAI	ACCTGC	1 cut(s)	290
BmtI	GCTAGC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	73, 426
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	100, 268, 482
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	73, 426
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	60, 236, 342
BseNI	ACTGG	3 cut(s)	100, 268, 482
BseRI	GAGGAG	2 cut(s)	57, 62
BseXI	GCAGC	8 cut(s)	139, 151, 160, 163, 166, 406, 428, 443
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	81, 197, 361
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	5 cut(s)	395, 426, 428, 434, 525
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	59, 235, 341
BspFNI	CGCG	1 cut(s)	428
BspMAI	CTGCAG	2 cut(s)	37, 418
BspMI	ACCTGC	1 cut(s)	290
BspOI	GCTAGC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	100, 268, 482
BssECI	CCNNGG	2 cut(s)	73, 426
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	498
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	46, 169, 222, 328
BstDSI	CCRYGG	1 cut(s)	426
BstEII	GGTNACC	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	3 cut(s)	81, 197, 361
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 170, 173, 179, 296, 401, 425, 428, 434
BstPI	GGTNACC	1 cut(s)	302
BstSFI	CTRYAG	3 cut(s)	33, 414, 438
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	8 cut(s)	139, 151, 160, 163, 166, 406, 428, 443
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	2 cut(s)	390, 411
BtsIMutI	CAGTG	3 cut(s)	93, 390, 411
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	244
Cfr42I	CCGCGG	1 cut(s)	429
DdeI	CTNAG	4 cut(s)	46, 169, 222, 328
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	81
Eco91I	GGTNACC	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	302
FaiI	YATR	1 cut(s)	440
FaqI	GGGAC	1 cut(s)	14
FokI	GGATG	1 cut(s)	554
FspBI	CTAG	4 cut(s)	42, 195, 243, 353
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	585
HinfI	GANTC	2 cut(s)	11, 38
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	366, 516
Hpy188III	TCNNGA	2 cut(s)	102, 386
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	149, 334
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	35, 232, 290, 299, 416
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 170, 173, 179, 296, 401, 425, 428, 434
HpyF3I	CTNAG	4 cut(s)	46, 169, 222, 328
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	70, 367, 527
Lsp1109I	GCAGC	8 cut(s)	139, 151, 160, 163, 166, 406, 428, 443
MaeI	CTAG	4 cut(s)	42, 195, 243, 353
MaeIII	GTNAC	7 cut(s)	8, 107, 197, 302, 315, 334, 553
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	16, 208, 248
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	5, 47
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	78, 83, 98, 110, 360, 559
MspA1I	CMGCKG	3 cut(s)	419, 428, 434
MspI	CCGG	1 cut(s)	585
MunI	CAATTG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	9 cut(s)	161, 170, 173, 179, 296, 401, 425, 428, 434
NdeII	GATC	1 cut(s)	253
NheI	GCTAGC	1 cut(s)	242
NmuCI	GTSAC	5 cut(s)	8, 197, 315, 334, 553
NspV	TTCGAA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	120
PleI	GAGTC	2 cut(s)	5, 46
PpsI	GAGTC	2 cut(s)	5, 46
PspEI	GGTNACC	1 cut(s)	302
PstI	CTGCAG	2 cut(s)	37, 418
PvuII	CAGCTG	1 cut(s)	419
SacII	CCGCGG	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	5, 47
SfcI	CTRYAG	3 cut(s)	33, 414, 438
Sfr303I	CCGCGG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	429
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	1 cut(s)	339
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	395, 426, 428, 434, 525
SspMI	CTAG	4 cut(s)	42, 195, 243, 353
StuI	AGGCCT	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	132, 237
TasI	AATT	1 cut(s)	339
TauI	GCSGC	3 cut(s)	398, 431, 437
TscAI	CASTG	3 cut(s)	100, 397, 418
TseFI	GTSAC	5 cut(s)	8, 197, 315, 334, 553
TseI	GCWGC	8 cut(s)	152, 164, 173, 176, 179, 416, 419, 431
Tsp45I	GTSAC	5 cut(s)	8, 197, 315, 334, 553
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	3 cut(s)	100, 397, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	4 cut(s)	42, 195, 243, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.