Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Reverse (-)

35882302 .. 35883200

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATAGAAGTGATTCAGCCCCAATGATCGGCATTCACACAGAGTCATCATCGTCAAGAAGTAAGGCTGCTGCCAAAGGAGAAGCGTATCATGTCATGAGGGTACTAGCTGCTGATCCCAAGCACGATCATGATAAAGGAGCTGGATGGAAGAAGGGTGTTGCCGTGCTCGATTTCATTCTAAGGCTAGGCGCCACTGCAGCTGCTCTAGGCGCTGCCGTGACCATGGCGTCCAGCGAGCAGACTCTTCCGTTCTTCACACAATTCTTCCAGTTTTCAGCTGGTTATGATGACATGCCCACTTTCGCGTTTTTTGTGATAGCAATGGCCATAGTGAGTGGCTACCTTGTCCTCTCCCTCCCCTTCTCCATAGTCACCATTGTCCGTCCCCAGTTAGTTGCTCCGAGGCTTCTCTTGCTTATTTTCGACACTCTGGCGCTTACTCTGAACACCTCTGCTGCTGCTGCCGCTGCCGCCATAGTTTACTTGGCTCACAATGGGAACTCGGATGCGAATTGGCTTGCTATTTGCCAACAGTTTACTGACTTCTGCCAGCAAACCAGCGGGGCTGTGGTTTCAGCATTCGTCGCAGTTGTTATGTTCACAGCATTGATTCTGCTGTCTGCTGTTGCTCTCCGAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

216

Amino Acids

22.78

Weight (kDa)

6.96

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	52 - 199	9e-45	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	1 cut(s)	308
AciI	CCGC	3 cut(s)	468, 474, 564
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	2 cut(s)	192, 230
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	110, 143, 203, 281, 644
AluI	AGCT	5 cut(s)	110, 143, 203, 281, 644
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	3 cut(s)	194, 215, 439
AsuHPI	GGTGA	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	2 cut(s)	149, 203
BfaI	CTAG	3 cut(s)	107, 188, 209
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	3 cut(s)	195, 216, 440
BmiI	GGNNCC	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	192, 230
BsaJI	CCNNGG	2 cut(s)	225, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	271, 391
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	225, 404
BseGI	GGATG	2 cut(s)	152, 514
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	271, 391
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	2 cut(s)	33, 581
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	27, 115, 127
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	3 cut(s)	468, 474, 564
BspANI	GGCC	1 cut(s)	329
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	2 cut(s)	96, 130
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	271, 391
BssECI	CCNNGG	2 cut(s)	225, 404
BssMI	GATC	3 cut(s)	27, 115, 127
BssNI	GRCGYC	2 cut(s)	192, 230
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	537
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	2 cut(s)	192, 230
BstC8I	GCNNGC	3 cut(s)	239, 522, 554
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	152, 514
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	3 cut(s)	195, 216, 440
BstHHI	GCGC	3 cut(s)	194, 215, 439
BstKTI	GATC	3 cut(s)	30, 118, 130
BstMBI	GATC	3 cut(s)	27, 115, 127
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 212, 415, 464, 467, 470, 473, 587
BstNSI	RCATGY	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	152, 514
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	239, 522, 554
CciI	TCATGA	2 cut(s)	96, 130
CfoI	GCGC	3 cut(s)	194, 215, 439
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	5 cut(s)	92, 97, 131, 226, 295
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	182
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	29, 117, 129
DpnII	GATC	3 cut(s)	27, 115, 127
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	5 cut(s)	95, 100, 134, 229, 298
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	5 cut(s)	91, 96, 130, 225, 294
FauI	CCCGC	1 cut(s)	557
FokI	GGATG	2 cut(s)	159, 521
FspBI	CTAG	3 cut(s)	107, 188, 209
GlaI	GCGC	3 cut(s)	193, 214, 438
HaeII	RGCGCY	3 cut(s)	195, 216, 440
HaeIII	GGCC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	3 cut(s)	194, 215, 439
Hin1I	GRCGYC	2 cut(s)	192, 230
Hin1II	CATG	5 cut(s)	95, 100, 134, 229, 298
Hin6I	GCGC	3 cut(s)	192, 213, 437
HinP1I	GCGC	3 cut(s)	192, 213, 437
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	4 cut(s)	14, 44, 244, 613
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	484, 540, 603
Hpy188I	TCNGA	4 cut(s)	405, 447, 508, 638
Hpy188III	TCNNGA	3 cut(s)	57, 97, 131
Hpy8I	GTNNAC	3 cut(s)	484, 540, 603
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	148, 373
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 212, 415, 464, 467, 470, 473, 587
HpyF3I	CTNAG	1 cut(s)	182
Hsp92I	GRCGYC	2 cut(s)	192, 230
Hsp92II	CATG	5 cut(s)	95, 100, 134, 229, 298
HspAI	GCGC	3 cut(s)	192, 213, 437
KasI	GGCGCC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	27, 115, 127
LmnI	GCTCC	2 cut(s)	140, 406
LpnPI	CCDG	8 cut(s)	129, 247, 267, 284, 404, 419, 566, 574
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	107, 188, 209
MaeIII	GTNAC	2 cut(s)	220, 373
MalI	GATC	3 cut(s)	29, 117, 129
MboI	GATC	3 cut(s)	27, 115, 127
MboII	GAAGA	4 cut(s)	163, 239, 247, 259
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	2 cut(s)	263, 514
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	53, 238
MnlI	CCTC	5 cut(s)	93, 362, 368, 399, 463
Mox20I	TGGCCA	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	4 cut(s)	203, 281, 470, 564
Mva1269I	GAATGC	2 cut(s)	33, 581
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	8 cut(s)	200, 212, 415, 464, 467, 470, 473, 587
NarI	GGCGCC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	27, 115, 127
NlaIII	CATG	5 cut(s)	95, 100, 134, 229, 298
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	220, 373
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	2 cut(s)	96, 130
PctI	GAATGC	2 cut(s)	33, 581
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	14, 613
PleI	GAGTC	2 cut(s)	52, 238
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	2 cut(s)	52, 238
PspN4I	GGNNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	202
PvuII	CAGCTG	2 cut(s)	203, 281
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	646
Sau3AI	GATC	3 cut(s)	27, 115, 127
SchI	GAGTC	2 cut(s)	53, 238
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	112, 145, 205, 283, 348, 455, 646
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	263, 514
SsiI	CCGC	3 cut(s)	468, 474, 564
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	3 cut(s)	107, 188, 209
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	537
TaqI	TCGA	2 cut(s)	171, 426
TasI	AATT	2 cut(s)	263, 514
TauI	GCSGC	2 cut(s)	470, 476
TfiI	GAWTC	2 cut(s)	14, 613
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	220, 373
Tsp45I	GTSAC	2 cut(s)	220, 373
TspDTI	ATGAA	1 cut(s)	166
TspGWI	ACGGA	2 cut(s)	240, 374
TspRI	CASTG	1 cut(s)	202
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	3 cut(s)	278, 484, 568
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	3 cut(s)	107, 188, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.