Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002734

Physical Location & Seq

Genomic Coordinates Forward (+)

13228307 .. 13229772

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAATAGATCGAGAAGTGATTCGACCGCAATCAACATTCAGCCAGAGTCATCATCATCGAGAAGTAAGCAGGCTGCTGCCAAAGGAGAAGCATATCAGGTGATGAGGGTGCTAGCTTCTGATCCCAAGCATGATCATGACAAAGGAGCTGGAGTGAAGAAGGGGGTTGCGGTGCTCGACTTCATATTAAGGCTTGGCGCTACGGCAGCTGCTCTTGGCGCCACCGTCGCCATGGCTTCCAGCGAACAGACTCTTCCTTTCTTCACACAGTTCTTCCAGTTTTCAGCCGGTTATGACGATTTGCCCACTTTTACGTTTTTCGTGATAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTCTGCCCTTCTCCATAGTAACCATTGTTCGTCCCCTACTAGTTGCTCCGAGGCTCCTCTTGCTTATTTTCGACACTTTGGCGGTTACTCTGAACACTTCTGCGGCGTCCGCTGCCGCTGCCATAGTTTACTTGGCTCACAATGGGAACTCCGATGCAAATTGGCTGGCTATCTGCCAACAGTTTGGTGATTTCTGCCGGCAGTCCAGTGGGGCTGTGGTTTCAGCATTCGTTGCAGTTGTTATCTTCACTGTGTTGATTCCGCTGTCTGCAATTGCCCTCCGAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

218

Amino Acids

22.99

Weight (kDa)

9.03

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	54 - 201	1.6e-44	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36100 AT3G11550 AT5G06200
fragaria_vesca	FvH4_2g15060 FvH4_5g26140 FvH4_6g19500
malus_domestica	MD12G1031100.v1.1 MD12G1031200.v1.1 MD14G1031600.v1.1
prunus_persica	Prupe.7G101300_v2.0.a1 Prupe.8G014400_v2.0.a1
pyrus_communis	pycom12g02910 pycom12g02920
rosa_chinensis	RchiOBHm_Chr3g0474831 RchiOBHm_Chr6g0277661 RchiOBHm_Chr7g0216851
rosa_laevigata	RLG00000002533 RLG00000013284 RLG00000023891
rosa_multiflora	Rmu_sc0000125.1_g000011 Rmu_sc0004848.1_g000011 Rmu_sc0011900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242820 Rroxscaffold_6G00406810
rosa_rugosa	Rorug03G0144500 Rorug06G0110500 Rorug07G0163700
rosa_samantha	Rh3AG194000 Rh3BG223900 Rh3CG218800 Rh3DG219800 Rh6AG217000 Rh7AG303200 Rh7BG295100 Rh7CG321800 Rh7DG303700
rosa_wichuraiana	Rw3G017670 Rw6G018930 Rw7G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	7 cut(s)	27, 170, 443, 464, 471, 477, 623
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	219, 467
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	4 cut(s)	116, 149, 209, 650
AluI	AGCT	4 cut(s)	116, 149, 209, 650
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	6 cut(s)	74, 77, 206, 209, 473, 479
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	200, 221
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	112, 560
AsuNHI	GCTAGC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	6 cut(s)	61, 64, 196, 218, 460, 466
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	2 cut(s)	113, 401
BfoI	RGCGCY	2 cut(s)	201, 222
BisI	GCNGC	8 cut(s)	75, 78, 207, 210, 465, 474, 477, 480
BlsI	GCNGC	8 cut(s)	76, 79, 208, 211, 466, 475, 478, 481
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	220, 416
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	219, 467
BsaJI	CCNNGG	2 cut(s)	231, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse118I	RCCGGY	2 cut(s)	287, 558
Bse1I	ACTGG	2 cut(s)	277, 567
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	231, 410
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	277, 567
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	6 cut(s)	61, 64, 196, 218, 460, 466
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	288, 559
BslFI	GGGAC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	8, 121, 133
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	7 cut(s)	27, 170, 443, 464, 471, 477, 623
BspANI	GGCC	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	220, 416
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	2 cut(s)	287, 558
BsrI	ACTGG	2 cut(s)	277, 567
BssAI	RCCGGY	2 cut(s)	287, 558
BssECI	CCNNGG	2 cut(s)	231, 410
BssMI	GATC	3 cut(s)	8, 121, 133
BssNI	GRCGYC	2 cut(s)	219, 467
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	4 cut(s)	226, 270, 543, 613
Bst6I	CTCTTC	2 cut(s)	258, 640
BstACI	GRCGYC	2 cut(s)	219, 467
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	4 cut(s)	72, 114, 528, 560
BstDSI	CCRYGG	1 cut(s)	231
BstH2I	RGCGCY	2 cut(s)	201, 222
BstHHI	GCGC	2 cut(s)	200, 221
BstKTI	GATC	3 cut(s)	11, 124, 136
BstMBI	GATC	3 cut(s)	8, 121, 133
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 218, 227, 421, 470, 473, 479, 593
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	6 cut(s)	61, 64, 196, 218, 460, 466
BstXI	CCANNNNNNTGG	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	574, 609
Cac8I	GCNNGC	4 cut(s)	72, 114, 528, 560
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	2 cut(s)	200, 221
Cfr10I	RCCGGY	2 cut(s)	287, 558
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	351
CviAII	CATG	3 cut(s)	131, 137, 232
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	3 cut(s)	10, 123, 135
DpnII	GATC	3 cut(s)	8, 121, 133
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	258, 640
EarI	CTCTTC	2 cut(s)	258, 640
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	134, 140, 235
FaiI	YATR	9 cut(s)	94, 132, 138, 185, 233, 294, 338, 377, 485
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	3 cut(s)	130, 136, 231
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	8 cut(s)	75, 78, 207, 210, 465, 474, 477, 480
Fsp4HI	GCNGC	8 cut(s)	75, 78, 207, 210, 465, 474, 477, 480
FspBI	CTAG	2 cut(s)	113, 401
GlaI	GCGC	2 cut(s)	199, 220
GluI	GCNGC	8 cut(s)	75, 78, 207, 210, 465, 474, 477, 480
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	2 cut(s)	201, 222
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	288, 559
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	2 cut(s)	200, 221
Hin1I	GRCGYC	2 cut(s)	219, 467
Hin1II	CATG	3 cut(s)	134, 140, 235
Hin6I	GCGC	2 cut(s)	198, 219
HinP1I	GCGC	2 cut(s)	198, 219
HinfI	GANTC	4 cut(s)	20, 47, 250, 619
HpaII	CCGG	2 cut(s)	288, 559
HphI	GGTGA	2 cut(s)	112, 560
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	5 cut(s)	121, 411, 453, 514, 644
Hpy188III	TCNNGA	4 cut(s)	12, 60, 137, 322
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	154, 379
HpyCH4III	ACNGT	4 cut(s)	226, 270, 543, 613
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	518, 596, 632
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 218, 227, 421, 470, 473, 479, 593
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	2 cut(s)	219, 467
Hsp92II	CATG	3 cut(s)	134, 140, 235
HspAI	GCGC	2 cut(s)	198, 219
KasI	GGCGCC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	8, 121, 133
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	3 cut(s)	146, 412, 420
Lsp1109I	GCAGC	6 cut(s)	61, 64, 196, 218, 460, 466
LweI	GCATC	1 cut(s)	505
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	2 cut(s)	113, 401
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	379, 445
MalI	GATC	3 cut(s)	10, 123, 135
MboI	GATC	3 cut(s)	8, 121, 133
MboII	GAAGA	5 cut(s)	169, 245, 253, 265, 598
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	520, 633
MluNI	TGGCCA	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	56, 244
MnlI	CCTC	5 cut(s)	99, 368, 405, 428, 650
Mox20I	TGGCCA	1 cut(s)	335
MroNI	GCCGGC	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	188, 652
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	4 cut(s)	209, 473, 479, 625
MspI	CCGG	2 cut(s)	288, 559
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	8 cut(s)	206, 218, 227, 421, 470, 473, 479, 593
NaeI	GCCGGC	1 cut(s)	560
NarI	GGCGCC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	8, 121, 133
NgoMIV	GCCGGC	1 cut(s)	558
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	134, 140, 235
NlaIV	GGNNCC	2 cut(s)	220, 416
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	640
PctI	GAATGC	1 cut(s)	587
PdiI	GCCGGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	20, 619
PkrI	GCNGC	8 cut(s)	76, 79, 208, 211, 466, 475, 478, 481
PleI	GAGTC	2 cut(s)	55, 244
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	55, 244
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	220, 416
PspPI	GGNCC	1 cut(s)	355
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	188, 652
SatI	GCNGC	8 cut(s)	75, 78, 207, 210, 465, 474, 477, 480
Sau3AI	GATC	3 cut(s)	8, 121, 133
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	56, 244
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	102, 118, 151, 211, 317, 354, 652
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	505
SfoI	GGCGCC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	135
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	2 cut(s)	520, 633
SsiI	CCGC	7 cut(s)	27, 170, 443, 464, 471, 477, 623
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	113, 401
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	226, 270, 543, 613
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	5 cut(s)	11, 23, 59, 177, 432
TasI	AATT	2 cut(s)	520, 633
TauI	GCSGC	2 cut(s)	467, 479
TfiI	GAWTC	2 cut(s)	20, 619
Tru1I	TTAA	2 cut(s)	188, 652
Tru9I	TTAA	2 cut(s)	188, 652
TscAI	CASTG	2 cut(s)	574, 616
TseI	GCWGC	6 cut(s)	74, 77, 206, 209, 473, 479
TspDTI	ATGAA	2 cut(s)	17, 172
TspRI	CASTG	2 cut(s)	574, 616
VpaK11BI	GGWCC	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	3 cut(s)	229, 490, 574
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	2 cut(s)	113, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.