Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005993

Physical Location & Seq

Genomic Coordinates Reverse (-)

16517588 .. 16518247

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGAGGGCTAGCGTCTTAAACGATTGTCTCAAGAGCATGAGTAATGCAGAGAAACAAGGGAAACGCCAAGTCATGATAAGACCATCTTCCAAAGTGATCATTAAGTTTCTCACTGTGATGCAAAAGCATGGTTACATTGCAGAGTTTGAATATGTGGATGATCACAGATCCGGGAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTTATTAGTCCTCGATATGACCTTGGCGTCAAGGAAATTGAAGGTTGGACTGCTAAATTGCTCCCTTCAAGACAGTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

9.55

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	7 - 130	5.8e-22	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39590
fragaria_vesca	FvH4_7g21650
malus_domestica	MD01G1122600.v1.1 MD03G1099000.v1.1 MD07G1192100.v1.1 MD11G1112900.v1.1
prunus_persica	Prupe.2G230100_v2.0.a1 Prupe.2G230100_v2.0.a1 Prupe.2G230100_v2.0.a1 Prupe.6G083600_v2.0.a1 Prupe.6G083600_v2.0.a1
pyrus_communis	pycom01g14950 pycom03g08130 pycom07g18150 pycom11g09510
rosa_chinensis	RchiOBHm_Chr1g0319681 RchiOBHm_Chr2g0133731 RchiOBHm_Chr3g0464201 RchiOBHm_Chr3g0475511
rosa_multiflora	Rmu_sc0004288.1_g000015 Rmu_sc0004591.1_g000014 Rmu_sc0005045.1_g000038
rosa_roxburghii	Rroxscaffold_1G00017550
rosa_samantha	Rh3DG224900
rosa_wichuraiana	Rw0G005350 Rw1G003990 Rw7G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	152, 260, 288
AluBI	AGCT	2 cut(s)	193, 323
AluI	AGCT	2 cut(s)	193, 323
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	334
BccI	CCATC	1 cut(s)	94
BclI	TGATCA	2 cut(s)	99, 163
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	12, 348, 391
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	99, 163, 170
BspACI	CCGC	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	75
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	99, 163, 170
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	118, 294
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	3 cut(s)	102, 166, 173
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	99, 163, 170
BstSCI	CCNGG	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	2 cut(s)	4, 235
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	5 cut(s)	40, 76, 131, 331, 338
CviJI	RGCY	5 cut(s)	11, 193, 205, 323, 347
CviKI_1	RGCY	5 cut(s)	11, 193, 205, 323, 347
CviQI	GTAC	1 cut(s)	301
DpnI	GATC	3 cut(s)	101, 165, 172
DpnII	GATC	3 cut(s)	99, 163, 170
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	5 cut(s)	43, 79, 134, 334, 341
FaiI	YATR	7 cut(s)	41, 77, 132, 156, 237, 332, 339
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	5 cut(s)	39, 75, 130, 330, 337
FbaI	TGATCA	2 cut(s)	99, 163
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	3 cut(s)	12, 348, 391
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	4, 235
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	43, 79, 134, 334, 341
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	34, 76, 288, 310
HpyAV	CCTTC	3 cut(s)	195, 254, 294
HpyCH4III	ACNGT	2 cut(s)	118, 294
HpyCH4V	TGCA	3 cut(s)	50, 124, 143
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	43, 79, 134, 334, 341
Ksp22I	TGATCA	2 cut(s)	99, 163
Kzo9I	GATC	3 cut(s)	99, 163, 170
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	3 cut(s)	187, 309, 323
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	3 cut(s)	12, 348, 391
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	101, 165, 172
MboI	GATC	3 cut(s)	99, 163, 170
MboII	GAAGA	4 cut(s)	81, 190, 353, 364
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	2 cut(s)	255, 275
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	240, 337
MseI	TTAA	4 cut(s)	20, 105, 195, 207
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	175
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	99, 163, 170
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	43, 79, 134, 334, 341
PagI	TCATGA	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	20, 105, 195, 207
Sau3AI	GATC	3 cut(s)	99, 163, 170
Sau96I	GGNCC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	4 cut(s)	195, 243, 265, 325
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	255, 275
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	3 cut(s)	12, 348, 391
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	118, 294
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	255, 275
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	4 cut(s)	20, 105, 195, 207
Tru9I	TTAA	4 cut(s)	20, 105, 195, 207
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	334
XspI	CTAG	3 cut(s)	12, 348, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.