Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005993

Physical Location & Seq

Genomic Coordinates Forward (+)

6538405 .. 6539067

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGCGCGTCAGCGTTCTCAATGACGCTCTGAAGAGCATGTACAACGCCGAGAAGAGGGGAAAGCGACAGGTCATGATCCGGCCGTCGTCAAAGGTCATCATCAAGTTCCTCCTGGTTATGCAGAAGCATGGATACATTGGGGAGTTTGAGTATGTTGATGACCATCGAGCTGGAAAGATTGTGGTTGAGCTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCCCGATTCGATGTCGGTGTGAAGGAGATTGAAGGCTGGACTGCTAGGCTTCTGCCTTCCAGACAGTTCGGATATATTGTGCTGACCACATCTGCTGGAATCATGGACCATGAAGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTCCTCGGTTTCTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

9.89

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39590
fragaria_vesca	FvH4_7g21650
malus_domestica	MD01G1122600.v1.1 MD03G1099000.v1.1 MD07G1192100.v1.1 MD11G1112900.v1.1
prunus_persica	Prupe.2G230100_v2.0.a1 Prupe.2G230100_v2.0.a1 Prupe.2G230100_v2.0.a1 Prupe.6G083600_v2.0.a1 Prupe.6G083600_v2.0.a1
pyrus_communis	pycom01g14950 pycom03g08130 pycom07g18150 pycom11g09510
rosa_chinensis	RchiOBHm_Chr1g0319681 RchiOBHm_Chr2g0133731 RchiOBHm_Chr3g0464201 RchiOBHm_Chr3g0475511
rosa_multiflora	Rmu_sc0004288.1_g000015 Rmu_sc0004591.1_g000014 Rmu_sc0005045.1_g000038
rosa_roxburghii	Rroxscaffold_1G00017550
rosa_samantha	Rh3DG224900
rosa_wichuraiana	Rw0G005350 Rw1G003990 Rw7G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	173, 193, 347
AluI	AGCT	3 cut(s)	173, 193, 347
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	334, 373
AvaII	GGWCC	2 cut(s)	334, 373
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	4 cut(s)	26, 58, 119, 151
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	174
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	273, 348
BfuI	GTATCC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	334, 373
BmgT120I	GGNCC	2 cut(s)	334, 373
BmrFI	CCNGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	29, 50
BstAUI	TGTACA	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	9
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	334, 373
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	5 cut(s)	40, 76, 131, 331, 338
CviJI	RGCY	7 cut(s)	85, 173, 193, 205, 264, 277, 347
CviKI_1	RGCY	7 cut(s)	85, 173, 193, 205, 264, 277, 347
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	83
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	29, 50
EarI	CTCTTC	2 cut(s)	29, 50
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	334, 373
Eco52I	CGGCCG	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	5 cut(s)	43, 79, 134, 334, 341
FaiI	YATR	8 cut(s)	41, 77, 122, 132, 156, 303, 332, 339
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	5 cut(s)	39, 75, 130, 330, 337
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	273, 348
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	43, 79, 134, 334, 341
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	234, 327
HpaII	CCGG	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	33, 299
Hpy188III	TCNNGA	2 cut(s)	76, 288
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	244, 254, 294
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	43, 79, 134, 334, 341
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	56, 95, 101, 128, 159, 250, 301, 309
MaeI	CTAG	2 cut(s)	273, 348
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	46, 67, 353
MhlI	GDGCHC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	51, 122, 195, 386
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	9
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	5 cut(s)	43, 79, 134, 334, 341
NmeAIII	GCCGAG	1 cut(s)	76
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	234, 327
PpuMI	RGGWCCY	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	334, 373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	334, 373
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	75, 99, 175, 195, 349, 375
SinI	GGWCC	2 cut(s)	334, 373
SspMI	CTAG	2 cut(s)	273, 348
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	169, 237
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	234, 327
TspDTI	ATGAA	1 cut(s)	354
VpaK11BI	GGWCC	2 cut(s)	334, 373
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	273, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.