Rw1G003990

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005993
Physical Location & Seq
Forward (+)
7503251 .. 7504082
832 bp
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UTR
Exon/CDS
Intron
Rw1G003990.1

Sequence Viewer

Length: 321 bp
ATGGTGAGAGTCAGTGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTAGAATCATGGATCACGAGGAAGCTAGAAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTACTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

106

Amino Acids

12.09

Weight (kDa)

9.33

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 18 - 106 2.4e-10 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 119, 188
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 266
BceAI ACGGC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciVI GTATCC 1 cut(s) 221
BfaI CTAG 3 cut(s) 201, 252, 276
BfuI GTATCC 1 cut(s) 221
BglII AGATCT 1 cut(s) 98
BmsI GCATC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 98, 262
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 98, 262
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 2 cut(s) 101, 265
BstMBI GATC 2 cut(s) 98, 262
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 1 cut(s) 98
BsuI GTATCC 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 19
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 40, 259
CviJI RGCY 4 cut(s) 133, 192, 200, 275
CviKI_1 RGCY 4 cut(s) 133, 192, 200, 275
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 100, 264
DpnII GATC 2 cut(s) 98, 262
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco57I CTGAAG 1 cut(s) 53
FaeI CATG 2 cut(s) 43, 262
FaiI YATR 4 cut(s) 41, 66, 84, 260
FatI CATG 2 cut(s) 39, 258
FspBI CTAG 3 cut(s) 201, 252, 276
Hin1II CATG 2 cut(s) 43, 262
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 2 cut(s) 9, 255
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 102, 216, 266
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 43, 262
Kzo9I GATC 2 cut(s) 98, 262
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 87, 178
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 201, 252, 276
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 100, 264
MboI GATC 2 cut(s) 98, 262
MboII GAAGA 4 cut(s) 46, 67, 200, 291
MflI RGATCY 1 cut(s) 98
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 51, 123, 168, 262
NdeII GATC 2 cut(s) 98, 262
NlaIII CATG 2 cut(s) 43, 262
NspI RCATGY 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 255
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 98, 262
SchI GAGTC 1 cut(s) 18
SetI ASST 2 cut(s) 277, 303
SfaNI GCATC 1 cut(s) 16
SspMI CTAG 3 cut(s) 201, 252, 276
TaaI ACNGT 1 cut(s) 222
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 19
XceI RCATGY 1 cut(s) 43
XspI CTAG 3 cut(s) 201, 252, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.