FvH4_7g21650

Belongs to the universal ribosomal protein uS8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005993
Physical Location & Seq
Forward (+)
17255698 .. 17257598
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21650.t1

Sequence Viewer

Length: 393 bp
ATGGTGAGGGTTAGCGTGCTGAATGATGCTCTTAAGGGCATGTACAATGCAGAGAAACGTGGTAAGCGTCAGGTGATGATCAGGCCATCATCCAAAGTGATCATCAAGTTCCTCACCGTGATGCAAAAGCATGGATACATTGGAGAATTCGAGTATGTTGATGACCACAGGTCTGGTAAAATTGTGGTTGAACTGAATGGAAGGCTTAACAAGTGTGGGGTCATTAGTCCTCGTTTTGATGTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCTTCAAGACAGTTTGGATATATCGTGCTTACCACTTCAGCTGGCATCATGGACCATGAAGAGGCTAGAAGAAAGAATGTCGGTGGGAAAGTTCTTGGTTTCTTTTATTAG

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

9.89

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.2e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 343
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 3 cut(s) 191, 260, 288
AhdI GACNNNNNGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 16, 85, 106
AvaII GGWCC 1 cut(s) 334
BccI CCATC 1 cut(s) 94
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 2 cut(s) 78, 99
BfaI CTAG 2 cut(s) 273, 348
BfrI CTTAAG 1 cut(s) 32
BfuI GTATCC 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 334
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 334
BmsI GCATC 3 cut(s) 16, 111, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 343
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 343
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 99
BspANI GGCC 1 cut(s) 85
BspTI CTTAAG 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 78, 99
Bst4CI ACNGT 2 cut(s) 118, 294
Bst6I CTCTTC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 17, 325
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 81, 102
BstMBI GATC 2 cut(s) 78, 99
BstNSI RCATGY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 17, 325
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 40, 131, 331, 338
CviJI RGCY 4 cut(s) 85, 205, 323, 347
CviKI_1 RGCY 4 cut(s) 85, 205, 323, 347
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 101
DpnII GATC 2 cut(s) 78, 99
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 336
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 146
FaeI CATG 4 cut(s) 43, 134, 334, 341
FaiI YATR 6 cut(s) 41, 132, 156, 303, 332, 339
FatI CATG 4 cut(s) 39, 130, 330, 337
FbaI TGATCA 2 cut(s) 78, 99
FokI GGATG 1 cut(s) 76
FspBI CTAG 2 cut(s) 273, 348
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 43, 134, 334, 341
HphI GGTGA 3 cut(s) 16, 85, 106
Hpy188III TCNNGA 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 195, 254, 294
HpyCH4III ACNGT 2 cut(s) 118, 294
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 50, 124
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 4 cut(s) 43, 134, 334, 341
Ksp22I TGATCA 2 cut(s) 78, 99
Kzo9I GATC 2 cut(s) 78, 99
LpnPI CCDG 5 cut(s) 56, 67, 154, 159, 309
LweI GCATC 3 cut(s) 16, 111, 336
MaeI CTAG 2 cut(s) 273, 348
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 80, 101
MboI GATC 2 cut(s) 78, 99
MboII GAAGA 2 cut(s) 353, 363
MluCI AATT 2 cut(s) 146, 180
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 122, 240, 337
MseI TTAA 3 cut(s) 33, 207, 249
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 32
NdeII GATC 2 cut(s) 78, 99
NlaIII CATG 4 cut(s) 43, 134, 334, 341
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PspPI GGNCC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 3 cut(s) 33, 207, 249
Sau3AI GATC 2 cut(s) 78, 99
Sau96I GGNCC 1 cut(s) 334
SetI ASST 6 cut(s) 61, 75, 173, 265, 278, 325
SfaNI GCATC 3 cut(s) 16, 111, 336
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 146, 180
SspMI CTAG 2 cut(s) 273, 348
TaaI ACNGT 2 cut(s) 118, 294
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 146, 180
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 3 cut(s) 33, 207, 249
Tru9I TTAA 3 cut(s) 33, 207, 249
TspDTI ATGAA 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 273, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.