MD11G1112900.v1.1

Belongs to the universal ribosomal protein uS8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0005993
Physical Location & Seq
Forward (+)
10212528 .. 10214338
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1112900.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGTGCGCGTCAGCGTTCTGAACGACGCTCTGAAGAGCATGTACAACGCCGAGAAGAGGGGAAAGAGACAGGTCATGATCCGGCCGTCGTCCAAGGTCATCATCAAGTTCCTCCTGGTTATGCAGAAGCACGGATATATTGGGGAGTTTGAGTATGTTGATGACCATAGAGCTGGAAAGATTGTGGTTGAGCTCAATGGGAGGCTGAACAAGTGTGGGGTTATAAGTCCCCGATTCGATGTCGGTGTGAAGGAGATTGAAGGCTGGACTGCTAGGCTTCTGCCTTCCAGACAGTTTGGATATATTGTGCTGACCACCTCTGCTGGAATCATGGACCACGAAGAAGCGAGGAGAAAGAATGTTGGTGGCAAGGTCCTCGGGTTCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

9.89

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.9e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AccII CGCG 1 cut(s) 9
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 173, 193
AluI AGCT 2 cut(s) 173, 193
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 334, 373
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 334, 373
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
Bbv12I GWGCWC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 334, 373
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 334, 373
BmrFI CCNGG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 93, 376
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 93, 376
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 364
BseX3I CGGCCG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 85
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 195
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 1 cut(s) 85
BspFNI CGCG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 93, 376
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 78
BstMCI CGRYCG 1 cut(s) 86
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 173
BstZI CGGCCG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 85
CciI TCATGA 1 cut(s) 75
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 334, 373
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 40, 76, 331
CviJI RGCY 6 cut(s) 85, 173, 193, 205, 264, 277
CviKI_1 RGCY 6 cut(s) 85, 173, 193, 205, 264, 277
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 83
EagI CGGCCG 1 cut(s) 83
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Ecl136II GAGCTC 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 334, 373
Eco52I CGGCCG 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 43, 79, 334
FaiI YATR 9 cut(s) 41, 77, 122, 138, 156, 168, 224, 303, 332
FaqI GGGAC 1 cut(s) 213
FatI CATG 3 cut(s) 39, 75, 330
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 9
Hin1II CATG 3 cut(s) 43, 79, 334
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 2 cut(s) 234, 327
HpaII CCGG 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 21, 33
Hpy188III TCNNGA 2 cut(s) 76, 288
Hpy99I CGWCG 2 cut(s) 29, 91
HpyAV CCTTC 3 cut(s) 244, 254, 294
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 3 cut(s) 43, 79, 334
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 8 cut(s) 56, 95, 101, 128, 159, 250, 301, 309
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 46, 67, 353
MhlI GDGCHC 1 cut(s) 195
MnlI CCTC 6 cut(s) 51, 122, 195, 328, 342, 386
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 9
NdeII GATC 1 cut(s) 78
NlaIII CATG 3 cut(s) 43, 79, 334
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 234, 327
PpuMI RGGWCCY 1 cut(s) 373
PsiI TTATAA 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 2 cut(s) 334, 373
PspPPI RGGWCCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 334, 373
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 75, 99, 175, 195, 320, 375
SinI GGWCC 2 cut(s) 334, 373
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 237
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 2 cut(s) 234, 327
TspGWI ACGGA 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 334, 373
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.