Rw0G005350

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00210
OG0005993
Physical Location & Seq
Forward (+)
12008 .. 12841
834 bp
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UTR
Exon/CDS
Intron
Rw0G005350.1

Sequence Viewer

Length: 399 bp
ATGGTGAGAGTCATCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGATCATGATCAGGCCTTTGTCCAAGGTCATCATCAAGTTCCTTATATCGTTATGCAGAAGCGCGGTTCGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGACAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACGTCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTACTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

132

Amino Acids

15.08

Weight (kDa)

9.8

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 132 9.9e-16 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 197, 266
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 348
AoxI GGCC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 16, 263
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 344
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciVI GTATCC 1 cut(s) 299
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 279, 354
BfuI GTATCC 1 cut(s) 299
BglII AGATCT 1 cut(s) 176
BmsI GCATC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 4 cut(s) 72, 78, 176, 340
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 85
BspFNI CGCG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 4 cut(s) 72, 78, 176, 340
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 75, 81, 179, 343
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 72, 78, 176, 340
BstNSI RCATGY 1 cut(s) 43
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 85
CciI TCATGA 1 cut(s) 75
CfoI GCGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 40, 76, 337
CviJI RGCY 5 cut(s) 85, 211, 270, 278, 353
CviKI_1 RGCY 5 cut(s) 85, 211, 270, 278, 353
CviQI GTAC 1 cut(s) 43
DpnI GATC 4 cut(s) 74, 80, 178, 342
DpnII GATC 4 cut(s) 72, 78, 176, 340
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 43, 79, 340
FaiI YATR 7 cut(s) 41, 77, 116, 124, 144, 162, 338
FatI CATG 3 cut(s) 39, 75, 336
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 2 cut(s) 279, 354
GlaI GCGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 43, 79, 340
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 2 cut(s) 9, 333
HphI GGTGA 2 cut(s) 16, 263
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 4 cut(s) 76, 180, 294, 344
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 3 cut(s) 43, 79, 340
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 4 cut(s) 72, 78, 176, 340
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 67, 165, 256, 315
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 279, 354
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 251, 386
MalI GATC 4 cut(s) 74, 80, 178, 342
MboI GATC 4 cut(s) 72, 78, 176, 340
MboII GAAGA 3 cut(s) 46, 67, 278
MflI RGATCY 1 cut(s) 176
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 51, 201, 246, 340
MvnI CGCG 1 cut(s) 134
NdeII GATC 4 cut(s) 72, 78, 176, 340
NlaIII CATG 3 cut(s) 43, 79, 340
NmuCI GTSAC 1 cut(s) 251
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 333
PflFI GACNNNGTC 1 cut(s) 322
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 4 cut(s) 72, 78, 176, 340
SchI GAGTC 1 cut(s) 18
SetI ASST 4 cut(s) 99, 326, 355, 381
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 134
SspMI CTAG 2 cut(s) 279, 354
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 326
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 333
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 322
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 279, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.