RchiOBHm_Chr3g0464201

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005993
Physical Location & Seq
Forward (+)
11366846 .. 11367556
711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43048

Sequence Viewer

Length: 273 bp
ATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGCTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACTACATCTACTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTTCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

8.82

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 1 - 90 8e-12 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 222
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AlwI GGATC 1 cut(s) 222
BauI CACGAG 1 cut(s) 218
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciVI GTATCC 1 cut(s) 173
BfaI CTAG 2 cut(s) 153, 228
BfuI GTATCC 1 cut(s) 173
BglII AGATCT 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 208
Bsp143I GATC 2 cut(s) 50, 214
BspPI GGATC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 208
BssMI GATC 2 cut(s) 50, 214
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 14, 174
BstKTI GATC 2 cut(s) 53, 217
BstMBI GATC 2 cut(s) 50, 214
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 1 cut(s) 50
BsuI GTATCC 1 cut(s) 173
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 68, 85, 144, 152, 227
CviKI_1 RGCY 5 cut(s) 68, 85, 144, 152, 227
DpnI GATC 2 cut(s) 52, 216
DpnII GATC 2 cut(s) 50, 214
FaeI CATG 1 cut(s) 214
FaiI YATR 3 cut(s) 18, 36, 212
FatI CATG 1 cut(s) 210
FspBI CTAG 2 cut(s) 153, 228
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 54, 168, 218
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 14, 174
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 2 cut(s) 50, 214
LpnPI CCDG 3 cut(s) 39, 130, 189
MaeI CTAG 2 cut(s) 153, 228
MalI GATC 2 cut(s) 52, 216
MboI GATC 2 cut(s) 50, 214
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 50
MnlI CCTC 3 cut(s) 75, 120, 214
NdeII GATC 2 cut(s) 50, 214
NlaIII CATG 1 cut(s) 214
PfeI GAWTC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 50
Sau3AI GATC 2 cut(s) 50, 214
SetI ASST 2 cut(s) 229, 255
SspMI CTAG 2 cut(s) 153, 228
TaaI ACNGT 2 cut(s) 14, 174
TfiI GAWTC 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 153
XspI CTAG 2 cut(s) 153, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.