pycom11g09510

Belongs to the universal ribosomal protein uS8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005993
Physical Location & Seq
Forward (+)
7751649 .. 7752184
536 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09510.1

Sequence Viewer

Length: 273 bp
ATGCAGAAGCACGGATATATTGGGGAGTTTGAGTATGTTGATGACCATAGAGCTGGAAAGATTGTGGTTGAGCTCAATGGGAGGCTGAACAAGTGTGGGGTTATTAGTCCCCGATTCGATGTTGGTGTGAAGGAGATTGAAGGCTGGACTGCTAGGCTTCTGCCTTCCAGACAGTTTGGATATATTGTGCTGACCACCTCTGCTGGAATCATGGACCACGAAGAAGCTAGGAGAAAGAATGTTGGTGGGAAGGTCCTCGGGTTCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

8.82

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 1 - 90 1.9e-12 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 3 cut(s) 53, 73, 227
AluI AGCT 3 cut(s) 53, 73, 227
Alw21I GWGCWC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 214, 253
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 214, 253
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 75
BfaI CTAG 2 cut(s) 153, 228
Bme18I GGWCC 2 cut(s) 214, 253
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 214, 253
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
BseDI CCNNGG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 214, 253
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 53, 73, 85, 144, 157, 227
CviKI_1 RGCY 6 cut(s) 53, 73, 85, 144, 157, 227
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 214, 253
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 18, 36, 48, 183, 212
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 75
FspBI CTAG 2 cut(s) 153, 228
Hin1II CATG 1 cut(s) 214
HinfI GANTC 2 cut(s) 114, 207
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 4 cut(s) 124, 134, 174, 244
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 214
LpnPI CCDG 4 cut(s) 39, 130, 181, 189
MaeI CTAG 2 cut(s) 153, 228
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 75
MnlI CCTC 3 cut(s) 75, 208, 266
NlaIII CATG 1 cut(s) 214
PfeI GAWTC 2 cut(s) 114, 207
PpuMI RGGWCCY 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 253
PspPI GGNCC 2 cut(s) 214, 253
PspPPI RGGWCCY 1 cut(s) 253
SacI GAGCTC 1 cut(s) 75
Sau96I GGNCC 2 cut(s) 214, 253
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 55, 75, 200, 229, 255
SinI GGWCC 2 cut(s) 214, 253
SspMI CTAG 2 cut(s) 153, 228
SstI GAGCTC 1 cut(s) 75
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 117
TfiI GAWTC 2 cut(s) 114, 207
TspGWI ACGGA 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 214, 253
XspI CTAG 2 cut(s) 153, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.