Rh3DG224900

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005993
Physical Location & Seq
Forward (+)
21162269 .. 21164563
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG224900.1

Sequence Viewer

Length: 330 bp
ATGGTGAGAGTCAGCGTTTTGAATGATGCTCTTAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATTATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGATGGAACTATTGATTTTGGATTATCTATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

109

Amino Acids

12.55

Weight (kDa)

9.67

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 87 2.6e-11 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 44
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 3 cut(s) 22, 191, 260
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 170
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 170
BspANI GGCC 1 cut(s) 85
BspTI CTTAAG 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 85, 205, 264, 272
CviKI_1 RGCY 4 cut(s) 85, 205, 264, 272
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 122, 138, 156
FatI CATG 1 cut(s) 39
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 174, 288, 327
HpyAV CCTTC 2 cut(s) 96, 254
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 56, 67, 159, 250
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 2 cut(s) 67, 272
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 51, 195, 240
MseI TTAA 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 32
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 43
NspI RCATGY 1 cut(s) 43
PceI AGGCCT 1 cut(s) 85
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 1 cut(s) 170
SchI GAGTC 1 cut(s) 18
SetI ASST 2 cut(s) 75, 99
SfaNI GCATC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 134
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 273
Vha464I CTTAAG 1 cut(s) 32
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.