Rroxscaffold_1G00017550

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005993
Physical Location & Seq
Forward (+)
21602257 .. 21604591
2335 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00017550.1

Sequence Viewer

Length: 378 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTAAAGAGCATGTACAACGCCGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATTGTTATGCAGAAGCACGGTTATATCGGAGAGTTTGAGTATGTTGATGACCATAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTTAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACTGCTAGACTTCTTCCGTCAAGACAGCTAGTGGAGCAGAAGGAAACTTATAAGCCTGCGACTTCAGCTGGCATCAAGAGGGTTGATGACTTCGTAAGATGGGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

9.89

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 98 1.3e-11 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 3 cut(s) 22, 191, 260
AluBI AGCT 2 cut(s) 295, 335
AluI AGCT 2 cut(s) 295, 335
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BccI CCATC 1 cut(s) 360
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 273, 296
BglII AGATCT 1 cut(s) 170
BmsI GCATC 2 cut(s) 16, 348
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 57
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 170
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 78, 170
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 324, 337
BstKTI GATC 2 cut(s) 81, 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 78, 170
BstMWI GCNNNNNNNGC 2 cut(s) 301, 332
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 324, 337
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 40, 76
CviJI RGCY 7 cut(s) 85, 205, 264, 295, 322, 335, 371
CviKI_1 RGCY 7 cut(s) 85, 205, 264, 295, 322, 335, 371
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 172
DpnII GATC 2 cut(s) 78, 170
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 43, 79
FaiI YATR 8 cut(s) 41, 77, 122, 138, 156, 168, 318, 376
FatI CATG 2 cut(s) 39, 75
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 2 cut(s) 273, 296
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 2 cut(s) 43, 79
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 4 cut(s) 76, 174, 288, 343
HpyAV CCTTC 3 cut(s) 96, 254, 301
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 332
Hsp92II CATG 2 cut(s) 43, 79
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 170
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 56, 67, 159, 250, 321, 336
LweI GCATC 2 cut(s) 16, 348
MaeI CTAG 2 cut(s) 273, 296
MalI GATC 2 cut(s) 80, 172
MboI GATC 2 cut(s) 78, 170
MboII GAAGA 2 cut(s) 67, 272
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 51, 195, 240, 339
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 301, 332
NdeII GATC 2 cut(s) 78, 170
NlaIII CATG 2 cut(s) 43, 79
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsiI TTATAA 1 cut(s) 318
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 78, 170
SchI GAGTC 1 cut(s) 18
SetI ASST 4 cut(s) 75, 99, 297, 337
SfaNI GCATC 2 cut(s) 16, 348
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 2 cut(s) 273, 296
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 134
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 273
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 273, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.