Rw7G024830

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005993
Physical Location & Seq
Forward (+)
30931287 .. 30936797
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024830.1

Sequence Viewer

Length: 357 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTGTGATTGTGGAATCCCTGAAGGTGGTTTGCTTGCAAGGATTTGCCGCAAGTTTGGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

118

Amino Acids

13.29

Weight (kDa)

9.73

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 86 3.4e-11 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 53, 333
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 22, 191, 260
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BceAI ACGGC 1 cut(s) 285
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 170
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 317
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 170
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 78, 170
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 81, 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 78, 170
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 40, 76
CviJI RGCY 5 cut(s) 85, 205, 264, 272, 353
CviKI_1 RGCY 5 cut(s) 85, 205, 264, 272, 353
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 172
DpnII GATC 2 cut(s) 78, 170
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 53, 333
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 43, 79
FaiI YATR 5 cut(s) 41, 77, 122, 138, 156
FatI CATG 2 cut(s) 39, 75
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 2 cut(s) 43, 79
HinfI GANTC 2 cut(s) 9, 306
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 76, 174, 288
HpyAV CCTTC 3 cut(s) 96, 254, 308
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4V TGCA 2 cut(s) 124, 329
Hsp92II CATG 2 cut(s) 43, 79
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 170
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 56, 67, 159, 250, 324
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 273
MalI GATC 2 cut(s) 80, 172
MboI GATC 2 cut(s) 78, 170
MboII GAAGA 3 cut(s) 46, 67, 272
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 51, 195, 240
NdeII GATC 2 cut(s) 78, 170
NlaIII CATG 2 cut(s) 43, 79
NlaIV GGNNCC 1 cut(s) 352
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 352
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 78, 170
SchI GAGTC 1 cut(s) 18
SetI ASST 3 cut(s) 75, 99, 319
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 134, 294
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 1 cut(s) 306
TscAI CASTG 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 299
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.