Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Forward (+)

17909007 .. 17910210

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCTCTGCAGACAAACTCATAAACACAGATGTCCCTGAAAAGGACGTTTTTGCCTTCCACTTCCTCCAATCCCTCTCAAATCTCAGAAAACAAAACCCTTTTGATACTCCGGACCAAAAAAACTACCGCGTGAGGAAGATCAAGAAGGCTGCGTACGTTTCCATGGCCAGAGCAGCCGGAGGGAGTAGCCGGCTATGGAGCAGAGCCCTCTTGCGTAGAGCAGACAAAGATGACAACAAGATCGTAAGATTTTCAAGGAGGAAGTGGAAGATATCATCAAAACGGAGGAGGAGTAACCAGAGAGCTCCGGTGGTGGAGGAGGCGGCGGAGAGGCTGAGGAATCTTGTTCCGGGAGGCGGAGGAATGGAGACGTCAAAGCTGATGGAAGAGACGGCTCATTACATCAAGTGCCTTAGTATGCAGGTCAAGGTCATGCAGTGTCTCGTTGATGGCTTATCTCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043565 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.82

Weight (kDa)

10.41

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	18 - 77	6.7e-07	IBH1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	415
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	4 cut(s)	130, 326, 329, 360
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	43, 359
AgsI	TTSAA	1 cut(s)	258
AluBI	AGCT	2 cut(s)	308, 382
AluI	AGCT	2 cut(s)	308, 382
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	365, 386, 449
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	2 cut(s)	3, 168
ApeKI	GCWGC	2 cut(s)	152, 176
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	211, 310
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	139, 188
BccI	CCATC	2 cut(s)	379, 446
BceAI	ACGGC	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	365, 386, 449
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	3 cut(s)	153, 177, 327
BlsI	GCNGC	3 cut(s)	154, 178, 328
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	2 cut(s)	112, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 359
Bse118I	RCCGGY	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	43, 359
BseMII	CTCAG	2 cut(s)	100, 329
BseRI	GAGGAG	3 cut(s)	304, 307, 335
BseXI	GCAGC	2 cut(s)	139, 188
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	5, 170
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	5 cut(s)	113, 180, 193, 311, 353
BsiWI	CGTACG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	43, 359
BsmAI	GTCTC	3 cut(s)	365, 386, 449
BsmBI	CGTCTC	2 cut(s)	365, 386
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	5, 170
Bsp1286I	GDGCHC	2 cut(s)	211, 310
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	141, 243
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	4 cut(s)	130, 326, 329, 360
BspANI	GGCC	2 cut(s)	5, 170
BspCNI	CTCAG	2 cut(s)	99, 330
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	141, 243
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	86, 338, 416
BstDSI	CCRYGG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	144, 246
BstMAI	GTCTC	3 cut(s)	365, 386, 449
BstMBI	GATC	2 cut(s)	141, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	139, 188
BsuRI	GGCC	2 cut(s)	5, 170
BtgI	CCRYGG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	446
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	166, 436
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	86, 338, 416
DpnI	GATC	2 cut(s)	143, 245
DpnII	GATC	2 cut(s)	141, 243
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	2 cut(s)	344, 375
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	211, 310
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	211, 310
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	2 cut(s)	365, 386
FaeI	CATG	2 cut(s)	169, 439
FaiI	YATR	5 cut(s)	23, 167, 199, 422, 437
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	165, 435
Fnu4HI	GCNGC	3 cut(s)	153, 177, 327
FriOI	GRGCYC	2 cut(s)	211, 310
Fsp4HI	GCNGC	3 cut(s)	153, 177, 327
GluI	GCNGC	3 cut(s)	153, 177, 327
HaeIII	GGCC	2 cut(s)	5, 170
HapII	CCGG	5 cut(s)	113, 180, 193, 311, 353
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	169, 439
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	5 cut(s)	113, 180, 193, 311, 353
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	113, 145
HpyAV	CCTTC	2 cut(s)	67, 142
HpyCH4IV	ACGT	3 cut(s)	48, 159, 374
HpyCH4V	TGCA	3 cut(s)	11, 424, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	86, 338, 416
HpySE526I	ACGT	3 cut(s)	48, 159, 374
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	169, 439
Kpn2I	TCCGGA	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	141, 243
LmnI	GCTCC	2 cut(s)	201, 313
LpnPI	CCDG	9 cut(s)	51, 126, 184, 193, 206, 314, 324, 366, 410
Lsp1109I	GCAGC	2 cut(s)	139, 188
MaeII	ACGT	3 cut(s)	48, 159, 374
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	143, 245
MboI	GATC	2 cut(s)	141, 243
MboII	GAAGA	3 cut(s)	151, 283, 401
MhlI	GDGCHC	2 cut(s)	211, 310
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
Mox20I	TGGCCA	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	5 cut(s)	113, 180, 193, 311, 353
MspR9I	CCNGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	141, 243
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	2 cut(s)	169, 439
PdiI	GCCGGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	343
Pfl23II	CGTACG	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	154, 178, 328
Psp124BI	GAGCTC	1 cut(s)	310
PspLI	CGTACG	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	310
SatI	GCNGC	3 cut(s)	153, 177, 327
Sau3AI	GATC	2 cut(s)	141, 243
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	211, 310
SetI	ASST	7 cut(s)	51, 162, 310, 377, 384, 429, 435
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	4 cut(s)	130, 326, 329, 360
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	3 cut(s)	51, 162, 377
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	343
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	2 cut(s)	152, 176
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	115
ZraI	GACGTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.