Rh6DG257300

Transcription factor IBH1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002357
Physical Location & Seq
Reverse (-)
44729466 .. 44734391
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG257300.1

Sequence Viewer

Length: 540 bp
ATGGCTTCAGCTGTGGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGACAATCCCGGTCTTCTAATTCATCTGCCAGAAGAGTTAGCATGAAAAAGAAATGCTTAGGGGAGAAGATAAAGAAGAAAAAGAAGCTCAAGTGTTGTAAGGAGATCAAAAAGCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGCTTGTTGGATGAGGCTGGCCATTACATAAGGTGCCTCAACACACAGATCTCAACCCGACCCAGGCCTAGGCCCAATTCTTCTCTGACTTCGTCGATCGCGCTCTCATTCTCCGCCCTGACTCTCCCATCCGAACCTTCCTCCTCTCTTTCATCTTCCACCAAGGCTACCACATCCACGACAATTCTTGGATCCGCTGTGCCGTCATGTGCCTCAAGGTGCGTCAGCTCCACCTCGACTTCTTCATCGACAATAACTACCATGACGGAGACACCTGGTTTCATGATTTTCATTTCTCATTGCTCAAAAATGGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.29

Weight (kDa)

10.41

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 43 - 89 3.5e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccII CGCG 1 cut(s) 320
AciI CCGC 2 cut(s) 333, 414
AclWI GGATC 2 cut(s) 405, 418
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 282, 288
AjnI CCWGG 3 cut(s) 193, 281, 493
AluBI AGCT 6 cut(s) 11, 29, 151, 178, 222, 447
AluI AGCT 6 cut(s) 11, 29, 151, 178, 222, 447
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 405, 418
AoxI GGCC 3 cut(s) 238, 284, 290
ApeKI GCWGC 1 cut(s) 219
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 58
AvrII CCTAGG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 240
BamHI GGATCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 3 cut(s) 195, 283, 495
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 21, 288
BglII AGATCT 1 cut(s) 267
BisI GCNGC 1 cut(s) 220
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 4 cut(s) 73, 195, 283, 495
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 254, 412
BmrFI CCNGG 4 cut(s) 73, 195, 283, 495
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 3 cut(s) 35, 137, 418
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 207, 281, 287, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 288
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 3 cut(s) 195, 283, 495
BseDI CCNNGG 4 cut(s) 207, 281, 287, 381
BseGI GGATG 5 cut(s) 217, 235, 347, 392, 538
BseLI CCNNNNNNNGG 2 cut(s) 282, 288
BseMI GCAATG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 240, 286, 292
BshNI GGYRCC 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 282, 288
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 3 cut(s) 240, 286, 292
Bsp119I TTCGAA 1 cut(s) 58
Bsp143I GATC 4 cut(s) 168, 267, 315, 410
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 333, 414
BspANI GGCC 3 cut(s) 240, 286, 292
BspFNI CGCG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 254, 412
BspPI GGATC 2 cut(s) 405, 418
BspQI GCTCTTC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 207, 281, 287, 381
BssMI GATC 4 cut(s) 168, 267, 315, 410
BssT1I CCWWGG 3 cut(s) 207, 287, 381
Bst2UI CCWGG 3 cut(s) 195, 283, 495
Bst6I CTCTTC 2 cut(s) 19, 91
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 217, 238
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 5 cut(s) 217, 235, 347, 392, 538
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 171, 270, 318, 413
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 4 cut(s) 168, 267, 315, 410
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 3 cut(s) 195, 283, 495
BstSCI CCNGG 4 cut(s) 71, 193, 281, 493
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 267, 410
BstYI RGATCY 2 cut(s) 267, 410
BsuRI GGCC 3 cut(s) 240, 286, 292
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 5 cut(s) 217, 235, 347, 392, 538
Cac8I GCNNGC 2 cut(s) 217, 238
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 291
CseI GACGC 1 cut(s) 430
CsiI ACCWGGT 2 cut(s) 193, 493
Csp6I GTAC 1 cut(s) 191
CviAII CATG 5 cut(s) 106, 208, 426, 481, 502
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 121
DpnI GATC 4 cut(s) 170, 269, 317, 412
DpnII GATC 4 cut(s) 168, 267, 315, 410
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 19, 91
EarI CTCTTC 2 cut(s) 19, 91
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 3 cut(s) 207, 287, 381
Eco147I AGGCCT 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 193, 281, 493
EcoT14I CCWWGG 3 cut(s) 207, 287, 381
ErhI CCWWGG 3 cut(s) 207, 287, 381
FaeI CATG 5 cut(s) 109, 211, 429, 484, 505
FaiI YATR 6 cut(s) 107, 209, 248, 427, 482, 503
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 5 cut(s) 105, 207, 425, 480, 501
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 4 cut(s) 224, 242, 334, 379
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 2 cut(s) 21, 288
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 3 cut(s) 240, 286, 292
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 109, 211, 429, 484, 505
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 34, 55, 340
HpaII CCGG 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 183, 306, 352
Hpy188III TCNNGA 3 cut(s) 21, 52, 502
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 366
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 5 cut(s) 109, 211, 429, 484, 505
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 4 cut(s) 168, 267, 315, 410
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 202
MabI ACCWGGT 2 cut(s) 193, 493
MaeI CTAG 2 cut(s) 21, 288
MalI GATC 4 cut(s) 170, 269, 317, 412
MboI GATC 4 cut(s) 168, 267, 315, 410
MboII GAAGA 8 cut(s) 36, 69, 108, 142, 151, 291, 366, 453
MflI RGATCY 2 cut(s) 267, 410
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 3 cut(s) 82, 295, 402
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 2 cut(s) 43, 334
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 6 cut(s) 226, 266, 370, 373, 442, 463
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 11, 416
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 4 cut(s) 73, 195, 283, 495
MvaI CCWGG 3 cut(s) 195, 283, 495
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 207
NdeII GATC 4 cut(s) 168, 267, 315, 410
NlaIII CATG 5 cut(s) 109, 211, 429, 484, 505
NlaIV GGNNCC 2 cut(s) 254, 412
NspV TTCGAA 1 cut(s) 58
PagI TCATGA 1 cut(s) 501
PceI AGGCCT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 55
PflFI GACNNNGTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 221
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 2 cut(s) 42, 334
PpsI GAGTC 2 cut(s) 42, 334
Psp6I CCWGG 3 cut(s) 193, 281, 493
PspGI CCWGG 3 cut(s) 193, 281, 493
PspN4I GGNNCC 2 cut(s) 254, 412
PspPI GGNCC 1 cut(s) 291
PsuI RGATCY 2 cut(s) 267, 410
PsyI GACNNNGTC 1 cut(s) 310
PvuI CGATCG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 19
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 4 cut(s) 168, 267, 315, 410
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 43, 334
ScrFI CCNGG 4 cut(s) 73, 195, 283, 495
SexAI ACCWGGT 2 cut(s) 193, 493
SfaNI GCATC 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 58
SmlI CTYRAG 3 cut(s) 50, 152, 433
SmoI CTYRAG 3 cut(s) 50, 152, 433
Sse9I AATT 3 cut(s) 82, 295, 402
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 333, 414
SspMI CTAG 2 cut(s) 21, 288
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 4 cut(s) 71, 193, 281, 493
StyI CCWWGG 3 cut(s) 207, 287, 381
TaqI TCGA 4 cut(s) 58, 314, 455, 467
TasI AATT 3 cut(s) 82, 295, 402
TfiI GAWTC 1 cut(s) 55
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 6 cut(s) 75, 122, 360, 453, 490, 499
TspGWI ACGGA 1 cut(s) 500
Tth111I GACNNNGTC 1 cut(s) 310
XbaI TCTAGA 1 cut(s) 20
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 21, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.