FvH4_2g17760

Transcription factor IBH1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002357
Physical Location & Seq
Reverse (-)
15251900 .. 15255145
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17760.t1

Sequence Viewer

Length: 564 bp
ATGTCCATGAATTCTAGGAGCTTATTGTTATCTCCAAACCCTAATTCCCTCAAATCTAGGTTCACTAGTGGATTGCTGAGAGCCCTGTTGAGAATAAACAAGCAACCTCATCAGCAACCCAGATCAGCAAGAGAGATCTGGAAACGCCAGCGCTTAATCAAGGCTGCTGCTTATAAATCCATGGCTTCTTCTGTTGGGAATAGAAGAGCTTGGAGTCGGGCGTTGCTTTGGAAGATCCGAAACCAGAGACGTAGAGGCTACGCGGCGAGGAGAAATACCGGCAGCAGTTCTCGTCAGTTGTCCGTGAAGAAAAGAATATGTGATCTGCAGAAAGGGAATAATAACAGCAAGAACCGGGTCGAGGTTGGTGGTTCGGGTCAAGTGGAGAAGCTCCGGAGGCTTGTTCCGGGCGGTCAGGTCATGGAAACTTGCAGCTTGTTGGAAGAGACTGCTCATTACATGAAGTGCCTTGCCACACAGGAGGATGCAACACATCAATTAGGACGAGTGAGACAGCATGGATCGATAAACTCAGTGGACGTACAAACAACACTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.19

Weight (kDa)

11.64

Isoelectric Point (pI)

67.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 15 - 82 7.2e-14 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AccII CGCG 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 2 cut(s) 263, 411
AclWI GGATC 2 cut(s) 229, 529
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 543
AfeI AGCGCT 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 4 cut(s) 21, 209, 391, 435
AluI AGCT 4 cut(s) 21, 209, 391, 435
Alw26I GTCTC 3 cut(s) 241, 440, 505
AlwI GGATC 2 cut(s) 229, 529
Aor13HI TCCGGA 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 152
ApeKI GCWGC 4 cut(s) 164, 167, 282, 432
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 1 cut(s) 153
AsuC2I CCSGG 2 cut(s) 356, 408
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 151, 154, 294, 444
BcnI CCSGG 2 cut(s) 356, 408
BcoDI GTCTC 3 cut(s) 241, 440, 505
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 3 cut(s) 15, 57, 66
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 154
BglII AGATCT 1 cut(s) 135
BisI GCNGC 5 cut(s) 165, 168, 264, 283, 433
BlsI GCNGC 5 cut(s) 166, 169, 265, 284, 434
Bme1390I CCNGG 2 cut(s) 356, 408
BmrFI CCNGG 2 cut(s) 356, 408
BmsI GCATC 1 cut(s) 475
BpuMI CCSGG 2 cut(s) 356, 408
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 393
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 68, 546
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 4 cut(s) 151, 154, 294, 444
Bsh1236I CGCG 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 524
BsiSI CCGG 4 cut(s) 279, 355, 394, 407
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 3 cut(s) 241, 440, 505
BsmBI CGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 5 cut(s) 122, 135, 234, 322, 521
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 263, 411
BspCNI CTCAG 2 cut(s) 69, 545
BspDI ATCGAT 1 cut(s) 524
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 2 cut(s) 229, 529
BspQI GCTCTTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 5 cut(s) 122, 135, 234, 322, 521
BssT1I CCWWGG 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 199, 438
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 77, 532
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 5 cut(s) 125, 138, 237, 325, 524
BstMAI GTCTC 3 cut(s) 241, 440, 505
BstMBI GATC 5 cut(s) 122, 135, 234, 322, 521
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 354, 406
BstSFI CTRYAG 1 cut(s) 326
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 4 cut(s) 151, 154, 294, 444
BstX2I RGATCY 2 cut(s) 135, 234
BstYI RGATCY 2 cut(s) 135, 234
Bsu15I ATCGAT 1 cut(s) 524
BsuTUI ATCGAT 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 524
Csp6I GTAC 1 cut(s) 542
CviAII CATG 5 cut(s) 7, 181, 421, 460, 518
CviJI RGCY 9 cut(s) 21, 83, 164, 185, 209, 258, 391, 400, 435
CviKI_1 RGCY 9 cut(s) 21, 83, 164, 185, 209, 258, 391, 400, 435
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 2 cut(s) 77, 532
DpnI GATC 5 cut(s) 124, 137, 236, 324, 523
DpnII GATC 5 cut(s) 122, 135, 234, 322, 521
Eam1104I CTCTTC 2 cut(s) 199, 438
EarI CTCTTC 2 cut(s) 199, 438
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 85
Eco47III AGCGCT 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 5 cut(s) 10, 184, 424, 463, 521
FaiI YATR 7 cut(s) 8, 174, 182, 319, 422, 461, 519
FatI CATG 5 cut(s) 6, 180, 420, 459, 517
Fnu4HI GCNGC 5 cut(s) 165, 168, 264, 283, 433
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 5 cut(s) 165, 168, 264, 283, 433
FspBI CTAG 3 cut(s) 15, 57, 66
GlaI GCGC 1 cut(s) 152
GluI GCNGC 5 cut(s) 165, 168, 264, 283, 433
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 4 cut(s) 279, 355, 394, 407
HhaI GCGC 1 cut(s) 153
Hin1II CATG 5 cut(s) 10, 184, 424, 463, 521
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 214
HpaII CCGG 4 cut(s) 279, 355, 394, 407
Hpy166II GTNNAC 2 cut(s) 63, 538
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 2 cut(s) 139, 394
Hpy8I GTNNAC 2 cut(s) 63, 538
HpyCH4IV ACGT 2 cut(s) 250, 540
HpyCH4V TGCA 3 cut(s) 328, 432, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 77, 532
HpySE526I ACGT 2 cut(s) 250, 540
Hsp92II CATG 5 cut(s) 10, 184, 424, 463, 521
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 393
Kzo9I GATC 5 cut(s) 122, 135, 234, 322, 521
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 18, 396
Lsp1109I GCAGC 4 cut(s) 151, 154, 294, 444
LweI GCATC 1 cut(s) 475
MaeI CTAG 3 cut(s) 15, 57, 66
MaeII ACGT 2 cut(s) 250, 540
MalI GATC 5 cut(s) 124, 137, 236, 324, 523
MboI GATC 5 cut(s) 122, 135, 234, 322, 521
MboII GAAGA 5 cut(s) 180, 216, 244, 319, 455
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 2 cut(s) 135, 234
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 4 cut(s) 10, 43, 497, 559
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 7 cut(s) 59, 117, 248, 261, 355, 390, 475
MroI TCCGGA 1 cut(s) 393
MseI TTAA 1 cut(s) 155
MspI CCGG 4 cut(s) 279, 355, 394, 407
MspR9I CCNGG 2 cut(s) 356, 408
MunI CAATTG 1 cut(s) 559
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 2 cut(s) 356, 408
NcoI CCATGG 1 cut(s) 180
NdeII GATC 5 cut(s) 122, 135, 234, 322, 521
NlaIII CATG 5 cut(s) 10, 184, 424, 463, 521
PciSI GCTCTTC 1 cut(s) 199
PkrI GCNGC 5 cut(s) 166, 169, 265, 284, 434
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PsiI TTATAA 1 cut(s) 174
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 2 cut(s) 135, 234
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 5 cut(s) 165, 168, 264, 283, 433
Sau3AI GATC 5 cut(s) 122, 135, 234, 322, 521
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 356, 408
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 4 cut(s) 10, 43, 497, 559
SsiI CCGC 2 cut(s) 263, 411
SspMI CTAG 3 cut(s) 15, 57, 66
StyD4I CCNGG 2 cut(s) 354, 406
StyI CCWWGG 1 cut(s) 180
TaiI ACGT 2 cut(s) 253, 543
TaqI TCGA 2 cut(s) 360, 524
TasI AATT 4 cut(s) 10, 43, 497, 559
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 540
TseI GCWGC 4 cut(s) 164, 167, 282, 432
TspDTI ATGAA 2 cut(s) 23, 476
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 1 cut(s) 540
XapI RAATTY 1 cut(s) 10
XspI CTAG 3 cut(s) 15, 57, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.