Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005198.1

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

31651 .. 33416

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005198.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggcagcttattcctccatggctcgtgcggttgggccacggatgaattggagcagagctcttcttttcaagctgcggaaccgggtgagttaccctaggttggtgaagaaaaagaaaagggttactgtgagaagtaacaaggtctccagatcaaagagttcagttcatattgacagaggcaacaagcttcgaaagctagttcctggcgatagtgatggggacagccatattgtttgccgaggatcgtgtcacctggatggattgtcggtgacggcgcgatctgggatggagacattgctaggcatgttgattcaagacattaggctgttggaggtgcctggtttgagcgtttttcattcgcctatcgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

11.15

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccII	CGCG	1 cut(s)	277
AciI	CCGC	2 cut(s)	29, 76
AclWI	GGATC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	70, 314
AjnI	CCWGG	3 cut(s)	202, 252, 337
AluBI	AGCT	5 cut(s)	8, 59, 73, 187, 196
AluI	AGCT	5 cut(s)	8, 59, 73, 187, 196
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	148, 284
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	5, 73
AspA2I	CCTAGG	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	97, 115, 242, 280
AsuII	TTCGAA	1 cut(s)	190
AvrII	CCTAGG	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	17, 60
BccI	CCATC	3 cut(s)	209, 251, 280
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	3 cut(s)	204, 254, 339
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	148, 284
BfaI	CTAG	3 cut(s)	96, 197, 299
BisI	GCNGC	2 cut(s)	6, 74
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	7, 75
Bme1390I	CCNGG	4 cut(s)	83, 204, 254, 339
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	80, 336
BmrFI	CCNGG	4 cut(s)	83, 204, 254, 339
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	4 cut(s)	18, 38, 95, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	3 cut(s)	204, 254, 339
BseDI	CCNNGG	4 cut(s)	18, 38, 95, 238
BseGI	GGATG	3 cut(s)	48, 262, 291
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	17, 60
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	148, 284
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	149, 242, 278
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	29, 76
BspANI	GGCC	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	80, 336
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	18, 38, 95, 238
BssMI	GATC	3 cut(s)	149, 242, 278
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	18, 95
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	3 cut(s)	204, 254, 339
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	190
BstDSI	CCRYGG	2 cut(s)	18, 38
BstF5I	GGATG	3 cut(s)	48, 262, 291
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	152, 245, 281
BstMAI	GTCTC	2 cut(s)	148, 284
BstMBI	GATC	3 cut(s)	149, 242, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	3 cut(s)	204, 254, 339
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	4 cut(s)	81, 202, 252, 337
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	17, 60
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	2 cut(s)	18, 38
BtsCI	GGATG	3 cut(s)	48, 262, 291
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	2 cut(s)	19, 304
CviJI	RGCY	9 cut(s)	8, 23, 37, 59, 73, 187, 196, 225, 325
CviKI_1	RGCY	9 cut(s)	8, 23, 37, 59, 73, 187, 196, 225, 325
DpnI	GATC	3 cut(s)	151, 244, 280
DpnII	GATC	3 cut(s)	149, 242, 278
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	18, 95
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	202, 252, 337
EcoT14I	CCWWGG	2 cut(s)	18, 95
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	18, 95
FaeI	CATG	2 cut(s)	22, 307
FaiI	YATR	5 cut(s)	20, 168, 228, 305, 370
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	18, 303
Fnu4HI	GCNGC	2 cut(s)	6, 74
FokI	GGATG	3 cut(s)	55, 269, 298
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	6, 74
FspBI	CTAG	3 cut(s)	96, 197, 299
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	6, 74
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	22, 307
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	4 cut(s)	97, 115, 242, 280
Hpy188III	TCNNGA	2 cut(s)	147, 314
HpyCH4III	ACNGT	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	22, 307
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	149, 242, 278
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	95, 160, 189, 216, 239, 266, 267, 324, 351
Lsp1109I	GCAGC	2 cut(s)	17, 60
MaeI	CTAG	3 cut(s)	96, 197, 299
MaeIII	GTNAC	5 cut(s)	89, 121, 134, 248, 268
MalI	GATC	3 cut(s)	151, 244, 280
MboI	GATC	3 cut(s)	149, 242, 278
MboII	GAAGA	2 cut(s)	53, 118
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	25, 170, 233, 325
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	4 cut(s)	83, 204, 254, 339
MvaI	CCWGG	3 cut(s)	204, 254, 339
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	149, 242, 278
NlaIII	CATG	2 cut(s)	22, 307
NlaIV	GGNNCC	2 cut(s)	80, 336
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	248, 268
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	7, 75
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	3 cut(s)	202, 252, 337
PspGI	CCWGG	3 cut(s)	202, 252, 337
PspN4I	GGNNCC	2 cut(s)	80, 336
PspPI	GGNCC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	6, 74
Sau3AI	GATC	3 cut(s)	149, 242, 278
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	4 cut(s)	83, 204, 254, 339
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	9 cut(s)	10, 61, 75, 101, 144, 189, 198, 255, 336
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	2 cut(s)	29, 76
SspMI	CTAG	3 cut(s)	96, 197, 299
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	4 cut(s)	81, 202, 252, 337
StyI	CCWWGG	2 cut(s)	18, 95
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	248, 268
TseI	GCWGC	2 cut(s)	5, 73
Tsp45I	GTSAC	2 cut(s)	248, 268
TspDTI	ATGAA	3 cut(s)	59, 155, 344
TspGWI	ACGGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XmaJI	CCTAGG	1 cut(s)	95
XspI	CTAG	3 cut(s)	96, 197, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.