Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

45376863 .. 45378450

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATTCTCAGCACTCGTCTTCGAGGCCTAACAGTTCCAGTTTGAAATCTAGGTTCACACTAGGGTTTCTTCGAGCCCTGAAGAGATTAAACAGGCAACCATCATCATCATCACCGCCACAAACTGTATCTTCTCCTAGGGAGATGTGTAGACGATATCTGAGAATTAGAATTGCTGCTGATGCTTCCATGGCTTCAGCTGTGGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGACAATCCCGGTCTTCTAATTCATCTGCCAGAAGAGTTAGCATGAAAAAGAAATGCTTAGGGAAGAAGATAAAGAAGAAAAAGAAGCTCAAGTGTTGTAAGGAGATCAACAAGCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGCTTGTTGGATGAGGTTGCCCATTACATAAGGTGCCTCAACACACAGTGTCCTCAAAGGCTCTCTAGGCCCAGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.4

Weight (kDa)

11.59

Isoelectric Point (pI)

77.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 85	2.8e-14	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	107 - 150	3.3e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	101, 180
AdeI	CACNNNGTG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	5 cut(s)	200, 218, 340, 367, 411
AluI	AGCT	5 cut(s)	200, 218, 340, 367, 411
AoxI	GGCC	2 cut(s)	26, 476
ApeKI	GCWGC	2 cut(s)	176, 408
ApoI	RAATTY	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	247
AvrII	CCTAGG	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	12, 258
BbvI	GCAGC	2 cut(s)	163, 420
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	262
BfaI	CTAG	5 cut(s)	51, 62, 138, 210, 474
BisI	GCNGC	2 cut(s)	177, 409
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	178, 410
Bme1390I	CCNGG	2 cut(s)	262, 384
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	262, 384
BmsI	GCATC	2 cut(s)	172, 391
BpiI	GAAGAC	2 cut(s)	12, 258
Bpu10I	CCTNAGC	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	224, 326
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	137, 189, 396
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	137, 189, 396
BseGI	GGATG	2 cut(s)	406, 424
BseMII	CTCAG	2 cut(s)	23, 152
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	163, 420
BshFI	GGCC	2 cut(s)	28, 478
BshNI	GGYRCC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	2 cut(s)	28, 478
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	189, 396
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	28, 478
BspCNI	CTCAG	2 cut(s)	22, 153
BspLI	GGNNCC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	137, 189, 396
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	137, 189, 396
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	35, 127, 456
Bst6I	CTCTTC	3 cut(s)	77, 208, 280
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	9, 161, 310
BstDSI	CCRYGG	2 cut(s)	189, 396
BstF5I	GGATG	2 cut(s)	406, 424
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 191, 401, 475
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	260, 382
BstV1I	GCAGC	2 cut(s)	163, 420
BstV2I	GAAGAC	2 cut(s)	12, 258
BsuRI	GGCC	2 cut(s)	28, 478
BtgI	CCRYGG	2 cut(s)	189, 396
BtsCI	GGATG	2 cut(s)	406, 424
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	477
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	190, 295, 397
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	3 cut(s)	9, 161, 310
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraIII	CACNNNGTG	1 cut(s)	456
Eam1104I	CTCTTC	3 cut(s)	77, 208, 280
EarI	CTCTTC	3 cut(s)	77, 208, 280
Eco130I	CCWWGG	3 cut(s)	137, 189, 396
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	101, 180
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	3 cut(s)	137, 189, 396
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	137, 189, 396
FaeI	CATG	3 cut(s)	193, 298, 400
FaiI	YATR	4 cut(s)	191, 296, 398, 437
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	3 cut(s)	189, 294, 396
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	177, 409
FokI	GGATG	2 cut(s)	413, 431
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	177, 409
FspBI	CTAG	5 cut(s)	51, 62, 138, 210, 474
GluI	GCNGC	2 cut(s)	177, 409
HaeIII	GGCC	2 cut(s)	28, 478
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	3 cut(s)	193, 298, 400
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	223, 244
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	57, 152
Hpy188I	TCNGA	2 cut(s)	162, 372
Hpy188III	TCNNGA	2 cut(s)	210, 241
Hpy8I	GTNNAC	2 cut(s)	57, 152
HpyCH4III	ACNGT	3 cut(s)	35, 127, 456
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 191, 401, 475
HpyF3I	CTNAG	3 cut(s)	9, 161, 310
Hsp92II	CATG	3 cut(s)	193, 298, 400
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	52, 79, 92, 275, 295, 369, 396
Lsp1109I	GCAGC	2 cut(s)	163, 420
LweI	GCATC	2 cut(s)	172, 391
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	5 cut(s)	51, 62, 138, 210, 474
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	4, 165, 171, 271
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	4 cut(s)	18, 415, 455, 471
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	262, 384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	182, 191, 401, 475
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	2 cut(s)	189, 396
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	3 cut(s)	193, 298, 400
NlaIV	GGNNCC	1 cut(s)	443
NspV	TTCGAA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	178, 410
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	177, 409
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	262, 384
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	56, 202, 220, 342, 369, 385, 413, 426, 443
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	172, 391
SfuI	TTCGAA	1 cut(s)	247
SmlI	CTYRAG	2 cut(s)	239, 341
SmoI	CTYRAG	2 cut(s)	239, 341
Sse9I	AATT	4 cut(s)	4, 165, 171, 271
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	5 cut(s)	51, 62, 138, 210, 474
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	260, 382
StyI	CCWWGG	3 cut(s)	137, 189, 396
TaaI	ACNGT	3 cut(s)	35, 127, 456
TaqI	TCGA	3 cut(s)	23, 73, 247
TasI	AATT	4 cut(s)	4, 165, 171, 271
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	2 cut(s)	176, 408
TspDTI	ATGAA	3 cut(s)	17, 264, 311
TspRI	CASTG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	5 cut(s)	51, 62, 138, 210, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.