Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

18594861 .. 18595367

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATCCGAAGCGCTTGTCTTTGAGGTCTAAATATACCACTTTTAAATCTAGGTTCACAAAAGGTTTTCTTCAAGCCTTGCAGAGAATTAATAGGCAAAGATCTATATCATCATCAACAAATATACCTTCTCCTATGGAGATGTGTAGAAGATATTTGAGTGTTAAGAATGCTGCTGATGCTGCCATGGCCTCAGCAGTTGGGACTAGAAGAGCTTGGAGTAGCACTTTGCTTACGAAGATTAATCGAAGCCACAAGGGTTCGCAGATTTATAATTGTTCAGCCAGAAGAACTGACAATAGTAAGAAGAGGATGAAGATGAAGAAGTGTGATGATGAGGAAGAGATCGGTACTATTTGTGAGGCGGACGAACTTCGGAAGTTTGTACCAGGTGGGGAAGCCATGGATATTTGCAGCTTGTTGGATGAGGCTGCGCATTACATAAAGTGTCTCAAGACTCAGGTAAAGGTGATGGAAAAGATTGCAGATATCTGTTCTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.99

Weight (kDa)

9.78

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 84	5.7e-16	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	125 - 157	1.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc16I	TGCGCA	1 cut(s)	435
AciI	CCGC	1 cut(s)	365
AfaI	GTAC	2 cut(s)	352, 387
AfeI	AGCGCT	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	215, 417
AluI	AGCT	2 cut(s)	215, 417
Alw26I	GTCTC	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	4 cut(s)	173, 182, 414, 431
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AseI	ATTAAT	2 cut(s)	90, 243
AspLEI	GCGC	2 cut(s)	15, 436
AsuHPI	GGTGA	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	193
BbvI	GCAGC	4 cut(s)	160, 169, 418, 426
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	51, 207
BfoI	RGCGCY	1 cut(s)	16
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	4 cut(s)	174, 183, 415, 432
BlsI	GCNGC	4 cut(s)	175, 184, 416, 433
Bme1390I	CCNGG	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	186, 402
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	186, 402
BseGI	GGATG	2 cut(s)	318, 430
BseJI	GATNNNNATC	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	207, 473
BseXI	GCAGC	4 cut(s)	160, 169, 418, 426
BshFI	GGCC	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	101, 345
Bsp19I	CCATGG	2 cut(s)	186, 402
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	206, 472
BspQI	GCTCTTC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	186, 402
BssMI	GATC	2 cut(s)	101, 345
BssT1I	CCWWGG	2 cut(s)	186, 402
Bst2UI	CCWGG	1 cut(s)	390
Bst6I	CTCTTC	3 cut(s)	205, 302, 336
BstDEI	CTNAG	2 cut(s)	193, 459
BstDSI	CCRYGG	2 cut(s)	186, 402
BstF5I	GGATG	2 cut(s)	318, 430
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	15, 436
BstKTI	GATC	2 cut(s)	104, 348
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	101, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstV1I	GCAGC	4 cut(s)	160, 169, 418, 426
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	2 cut(s)	186, 402
BtsCI	GGATG	2 cut(s)	318, 430
CfoI	GCGC	2 cut(s)	15, 436
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	351, 386
CviAII	CATG	2 cut(s)	187, 403
CviJI	RGCY	8 cut(s)	77, 191, 215, 252, 284, 401, 417, 431
CviKI_1	RGCY	8 cut(s)	77, 191, 215, 252, 284, 401, 417, 431
CviQI	GTAC	2 cut(s)	351, 386
DdeI	CTNAG	2 cut(s)	193, 459
DpnI	GATC	2 cut(s)	103, 347
DpnII	GATC	2 cut(s)	101, 345
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	3 cut(s)	205, 302, 336
EarI	CTCTTC	3 cut(s)	205, 302, 336
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	186, 402
Eco32I	GATATC	1 cut(s)	490
Eco47III	AGCGCT	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	186, 402
ErhI	CCWWGG	2 cut(s)	186, 402
FaeI	CATG	2 cut(s)	190, 406
FaiI	YATR	8 cut(s)	36, 107, 125, 137, 188, 273, 404, 443
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	186, 402
Fnu4HI	GCNGC	4 cut(s)	174, 183, 415, 432
FokI	GGATG	2 cut(s)	325, 437
Fsp4HI	GCNGC	4 cut(s)	174, 183, 415, 432
FspBI	CTAG	2 cut(s)	51, 207
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	2 cut(s)	14, 435
GluI	GCNGC	4 cut(s)	174, 183, 415, 432
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	15, 436
Hin1II	CATG	2 cut(s)	190, 406
Hin6I	GCGC	2 cut(s)	13, 434
HinP1I	GCGC	2 cut(s)	13, 434
HinfI	GANTC	2 cut(s)	4, 457
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	9, 378
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	82, 414, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
HpyF3I	CTNAG	2 cut(s)	193, 459
Hsp92II	CATG	2 cut(s)	190, 406
HspAI	GCGC	2 cut(s)	13, 434
Kzo9I	GATC	2 cut(s)	101, 345
LguI	GCTCTTC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	298, 375, 402, 446
Lsp1109I	GCAGC	4 cut(s)	160, 169, 418, 426
LweI	GCATC	1 cut(s)	169
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	51, 207
MalI	GATC	2 cut(s)	103, 347
MboI	GATC	2 cut(s)	101, 345
MboII	GAAGA	9 cut(s)	62, 162, 222, 250, 300, 319, 328, 334, 353
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	2 cut(s)	87, 274
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	18, 202, 303, 331, 355, 421
MseI	TTAA	4 cut(s)	45, 90, 165, 243
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
NcoI	CCATGG	2 cut(s)	186, 402
NdeII	GATC	2 cut(s)	101, 345
NlaIII	CATG	2 cut(s)	190, 406
NsbI	TGCGCA	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	175, 184, 416, 433
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PshBI	ATTAAT	2 cut(s)	90, 243
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	352, 387
RsaNI	GTAC	2 cut(s)	351, 386
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	45, 90, 165, 243
SatI	GCNGC	4 cut(s)	174, 183, 415, 432
Sau3AI	GATC	2 cut(s)	101, 345
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	9 cut(s)	29, 56, 67, 130, 217, 394, 419, 465, 471
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	87, 274
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	51, 207
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	186, 402
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	87, 274
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	45, 90, 165, 243
Tru9I	TTAA	4 cut(s)	45, 90, 165, 243
TseI	GCWGC	4 cut(s)	173, 182, 414, 431
TspDTI	ATGAA	3 cut(s)	17, 329, 335
VspI	ATTAAT	2 cut(s)	90, 243
XspI	CTAG	2 cut(s)	51, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.