Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016354.1

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

22898 .. 25249

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016354.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgaaatctcgcaagaagtccccaaagaggttgtcggagatctcatatggggctgaagaggccgaccaccacccaccagacttctctgaaaacctcaccggaggtccccaaagaggtcgtcagagatctcataggttcaccaaaggattgctgagagccctgtcgagaataaataagcatcgtctgcaacccagatcatcaagagagatccggaaacgccatcgcctaatcaaagctgctgcttatggatccatggcttcttctgtagggaatagaagagcttggagtcgggcgttgctttggaagatccgaaatcagacacgtagaggctacgcagcgacgagaaatattggcatcagtactcgtcagttgtccatgaagaacagaatatgtgatctgcagaaagggaataatagcaagaaccgggtcgaggttggtggtttgggtcaagtagataagcttcggaggcttgttccgggcggtcaggtcatggatacttgcagcttgttggaagaaactgctcattacatgaagtgccttgccacacaggtaaaggtgatgacaagaattgtggaagtttacaatatcccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.49

Weight (kDa)

11.34

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	4 cut(s)	202, 243, 256, 301
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	3 cut(s)	27, 113, 430
AflIII	ACRYGT	1 cut(s)	320
AluBI	AGCT	4 cut(s)	236, 281, 460, 504
AluI	AGCT	4 cut(s)	236, 281, 460, 504
AlwI	GGATC	4 cut(s)	202, 243, 256, 301
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	4 cut(s)	236, 239, 335, 501
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 103, 135
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	2 cut(s)	425, 477
AsuHPI	GGTGA	3 cut(s)	88, 130, 568
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	4 cut(s)	223, 226, 347, 513
BccI	CCATC	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	425, 477
BfmI	CTRYAG	2 cut(s)	264, 398
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	2 cut(s)	39, 125
BisI	GCNGC	4 cut(s)	237, 240, 336, 502
BlsI	GCNGC	4 cut(s)	238, 241, 337, 503
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	425, 477
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	106, 250
BmrFI	CCNGG	2 cut(s)	425, 477
BmsI	GCATC	2 cut(s)	187, 363
BpuMI	CCSGG	2 cut(s)	425, 477
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	2 cut(s)	98, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 113, 430
BseAI	TCCGGA	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	27, 113, 430
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	223, 226, 347, 513
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	4 cut(s)	99, 211, 424, 476
BslFI	GGGAC	2 cut(s)	4, 90
BslI	CCNNNNNNNGG	3 cut(s)	27, 113, 430
BsmFI	GGGAC	2 cut(s)	4, 90
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	144
BspEI	TCCGGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	106, 250
BspMAI	CTGCAG	1 cut(s)	402
BspPI	GGATC	4 cut(s)	202, 243, 256, 301
BspQI	GCTCTTC	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
BssT1I	CCWWGG	1 cut(s)	252
Bst6I	CTCTTC	2 cut(s)	51, 271
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	252
BstKTI	GATC	7 cut(s)	42, 128, 197, 210, 251, 309, 397
BstMBI	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 184, 466
BstSCI	CCNGG	2 cut(s)	423, 475
BstSFI	CTRYAG	2 cut(s)	264, 398
BstV1I	GCAGC	4 cut(s)	223, 226, 347, 513
BstX2I	RGATCY	5 cut(s)	39, 125, 207, 248, 306
BstYI	RGATCY	5 cut(s)	39, 125, 207, 248, 306
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	360
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	4 cut(s)	253, 376, 490, 529
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	7 cut(s)	41, 127, 196, 209, 250, 308, 396
DpnII	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
Eam1104I	CTCTTC	2 cut(s)	51, 271
EarI	CTCTTC	2 cut(s)	51, 271
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	256, 379, 493, 532
FaqI	GGGAC	2 cut(s)	4, 90
FatI	CATG	4 cut(s)	252, 375, 489, 528
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	237, 240, 336, 502
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	4 cut(s)	237, 240, 336, 502
GluI	GCNGC	4 cut(s)	237, 240, 336, 502
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	4 cut(s)	99, 211, 424, 476
Hin1II	CATG	4 cut(s)	256, 379, 493, 532
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	4 cut(s)	99, 211, 424, 476
HphI	GGTGA	3 cut(s)	88, 130, 568
Hpy166II	GTNNAC	2 cut(s)	138, 580
Hpy188I	TCNGA	6 cut(s)	37, 88, 123, 311, 318, 465
Hpy188III	TCNNGA	3 cut(s)	165, 201, 211
Hpy8I	GTNNAC	2 cut(s)	138, 580
Hpy99I	CGWCG	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	187, 400, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 184, 466
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	256, 379, 493, 532
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
LguI	GCTCTTC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	90, 112, 173, 205, 224, 437, 470, 489, 533
Lsp1109I	GCAGC	4 cut(s)	223, 226, 347, 513
LweI	GCATC	2 cut(s)	187, 363
MaeII	ACGT	1 cut(s)	322
MalI	GATC	7 cut(s)	41, 127, 196, 209, 250, 308, 396
MboI	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
MboII	GAAGA	6 cut(s)	68, 252, 288, 316, 391, 524
MflI	RGATCY	5 cut(s)	39, 125, 207, 248, 306
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	15, 489
MnlI	CCTC	8 cut(s)	21, 52, 95, 104, 107, 320, 424, 459
MroI	TCCGGA	1 cut(s)	210
MspI	CCGG	4 cut(s)	99, 211, 424, 476
MspR9I	CCNGG	2 cut(s)	425, 477
MwoI	GCNNNNNNNGC	3 cut(s)	59, 184, 466
NciI	CCSGG	2 cut(s)	425, 477
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
NlaIII	CATG	4 cut(s)	256, 379, 493, 532
NlaIV	GGNNCC	2 cut(s)	106, 250
PciSI	GCTCTTC	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	238, 241, 337, 503
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	106, 250
PspPI	GGNCC	1 cut(s)	104
PspPPI	RGGWCCY	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	402
PsuI	RGATCY	5 cut(s)	39, 125, 207, 248, 306
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	271
SatI	GCNGC	4 cut(s)	237, 240, 336, 502
Sau3AI	GATC	7 cut(s)	39, 125, 194, 207, 248, 306, 394
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	425, 477
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	187, 363
SfcI	CTRYAG	2 cut(s)	264, 398
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	423, 475
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	164, 429
TasI	AATT	1 cut(s)	567
TatI	WGTACW	1 cut(s)	359
TseI	GCWGC	4 cut(s)	236, 239, 335, 501
TspDTI	ATGAA	3 cut(s)	17, 392, 545
VpaK11BI	GGWCC	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.