Prupe.8G190000_v2.0.a1

Transcription factor IBH1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002357
Physical Location & Seq
Reverse (-)
18527057 .. 18529122
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G190000.1

Sequence Viewer

Length: 636 bp
ATGAATCCAAAGAGCTTGTCTTTGAGGCCTAAAACAAGTGTGAAATCTAGGTTCACCAAAGGGTTTCTTCAAGCCTTGAAGAGAATACAAGGGCAAAGATCTAGGTCACCAAATGTATCTTCTCCTAGGGAGATGTGTAGGAGATACTTGAGTGTTAAGATTGCTGCTGATGCATCCATGGCTTCAGCTGTTGGGTCTAGAAGAGCTTGGAGCCGAGCTTTGCTTACGAAGATTCGAAGCCACGGGGCTCCACGGGTTTATAAGTACTCAGCCAGAAGAATTGATAACAGTAAGAAGAAGAAGAAGAAGAAGAAGTGCGAGGATGGTGAGGAGATTGGTGTTAATAGTGAGGCGAATGAGCTTCGAAAGTTTGTGCCAGGTGGGGAAGCCATGGATATTTGCAGCTTGTTGGATGAGGCTGCCCATTACATAAAGTGTCTCAACACTCAGTGTTTTCAAAGGCGTAGGCGTGCATCGAAGCGAGGGAGAAAACCGCCTCAGGCGTTCCATTGTTTAGCTATTTGCACGAGTAGCGCGCGTCAACGGCGAGGAGTAGGAAAGCACTGTGAAGAGCCGCTTTATGGGTTTGCGAGGAGCATCTGCAAGAGGAAGAAGAAGACCACGCGAGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.87

Weight (kDa)

10.85

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 629
AccII CGCG 3 cut(s) 536, 538, 625
AciI CCGC 2 cut(s) 494, 575
AcuI CTGAAG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 450
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 3 cut(s) 71, 79, 458
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 7 cut(s) 15, 188, 206, 218, 361, 405, 518
AluI AGCT 7 cut(s) 15, 188, 206, 218, 361, 405, 518
Alw26I GTCTC 1 cut(s) 443
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 164, 402, 419
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 2 cut(s) 536, 538
AsuHPI GGTGA 3 cut(s) 46, 99, 338
AsuII TTCGAA 2 cut(s) 235, 364
AvrII CCTAGG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 1 cut(s) 250
BauI CACGAG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 3 cut(s) 151, 406, 414
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 560
BciT130I CCWGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 4 cut(s) 48, 102, 126, 198
BglII AGATCT 1 cut(s) 98
BisI GCNGC 4 cut(s) 165, 403, 420, 575
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 4 cut(s) 166, 404, 421, 576
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 378
BmiI GGNNCC 3 cut(s) 212, 249, 631
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 4 cut(s) 160, 182, 482, 606
BpiI GAAGAC 1 cut(s) 623
Bpu14I TTCGAA 2 cut(s) 235, 364
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 5 cut(s) 125, 177, 241, 251, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse21I CCTNAGG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 125, 177, 241, 251, 390
BseGI GGATG 3 cut(s) 173, 328, 418
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 3 cut(s) 282, 461, 512
BsePI GCGCGC 1 cut(s) 534
BseRI GAGGAG 3 cut(s) 344, 564, 607
BseXI GCAGC 3 cut(s) 151, 406, 414
Bsh1236I CGCG 3 cut(s) 536, 538, 625
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 1 cut(s) 28
Bsp119I TTCGAA 2 cut(s) 235, 364
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 98
Bsp19I CCATGG 2 cut(s) 177, 390
BspACI CCGC 2 cut(s) 494, 575
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 3 cut(s) 281, 460, 511
BspFNI CGCG 3 cut(s) 536, 538, 625
BspLI GGNNCC 3 cut(s) 212, 249, 631
BspQI GCTCTTC 2 cut(s) 196, 564
BspT104I TTCGAA 2 cut(s) 235, 364
BspT107I GGYRCC 1 cut(s) 629
BssECI CCNNGG 5 cut(s) 125, 177, 241, 251, 390
BssHII GCGCGC 1 cut(s) 534
BssMI GATC 1 cut(s) 98
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 3 cut(s) 125, 177, 390
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 290, 566
Bst6I CTCTTC 3 cut(s) 74, 196, 564
BstBI TTCGAA 2 cut(s) 235, 364
BstC8I GCNNGC 2 cut(s) 471, 536
BstDEI CTNAG 3 cut(s) 268, 447, 498
BstDSI CCRYGG 4 cut(s) 177, 241, 251, 390
BstEII GGTNACC 1 cut(s) 105
BstF5I GGATG 3 cut(s) 173, 328, 418
BstFNI CGCG 3 cut(s) 536, 538, 625
BstHHI GCGC 2 cut(s) 536, 538
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 4 cut(s) 170, 179, 531, 544
BstNI CCWGG 1 cut(s) 378
BstPI GGTNACC 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 376
BstUI CGCG 3 cut(s) 536, 538, 625
BstV1I GCAGC 3 cut(s) 151, 406, 414
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 1 cut(s) 28
BtgI CCRYGG 4 cut(s) 177, 241, 251, 390
BtsCI GGATG 3 cut(s) 173, 328, 418
BtsIMutI CAGTG 2 cut(s) 455, 562
Cac8I GCNNGC 2 cut(s) 471, 536
CfoI GCGC 2 cut(s) 536, 538
CseI GACGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 178, 391
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 3 cut(s) 268, 447, 498
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
DraIII CACNNNGTG 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 74, 196, 564
EarI CTCTTC 3 cut(s) 74, 196, 564
Eco130I CCWWGG 3 cut(s) 125, 177, 390
Eco147I AGGCCT 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 125, 177, 390
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 3 cut(s) 125, 177, 390
FaeI CATG 2 cut(s) 181, 394
FaiI YATR 5 cut(s) 179, 261, 392, 431, 582
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 561, 593
FatI CATG 2 cut(s) 177, 390
Fnu4HI GCNGC 4 cut(s) 165, 403, 420, 575
FokI GGATG 3 cut(s) 160, 335, 425
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 4 cut(s) 165, 403, 420, 575
FspBI CTAG 4 cut(s) 48, 102, 126, 198
GlaI GCGC 2 cut(s) 535, 537
GluI GCNGC 4 cut(s) 165, 403, 420, 575
HaeIII GGCC 1 cut(s) 28
HgaI GACGC 1 cut(s) 527
HhaI GCGC 2 cut(s) 536, 538
Hin1II CATG 2 cut(s) 181, 394
Hin6I GCGC 2 cut(s) 534, 536
HinP1I GCGC 2 cut(s) 534, 536
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HinfI GANTC 2 cut(s) 4, 232
HphI GGTGA 3 cut(s) 46, 99, 338
Hpy166II GTNNAC 2 cut(s) 54, 542
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 2 cut(s) 54, 542
HpyCH4III ACNGT 2 cut(s) 290, 566
HpyCH4V TGCA 5 cut(s) 173, 402, 473, 525, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 179, 531, 544
HpyF3I CTNAG 3 cut(s) 268, 447, 498
Hsp92II CATG 2 cut(s) 181, 394
HspAI GCGC 2 cut(s) 534, 536
Kzo9I GATC 1 cut(s) 98
LguI GCTCTTC 2 cut(s) 196, 564
LmnI GCTCC 3 cut(s) 210, 253, 594
LpnPI CCDG 4 cut(s) 286, 363, 390, 485
Lsp1109I GCAGC 3 cut(s) 151, 406, 414
LweI GCATC 4 cut(s) 160, 182, 482, 606
MaeI CTAG 4 cut(s) 48, 102, 126, 198
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 2 cut(s) 156, 342
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 3 cut(s) 536, 538, 625
MwoI GCNNNNNNNGC 4 cut(s) 170, 179, 531, 544
NcoI CCATGG 2 cut(s) 177, 390
NdeII GATC 1 cut(s) 98
NlaIII CATG 2 cut(s) 181, 394
NlaIV GGNNCC 3 cut(s) 212, 249, 631
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 175
NspV TTCGAA 2 cut(s) 235, 364
PauI GCGCGC 1 cut(s) 534
PceI AGGCCT 1 cut(s) 28
PciSI GCTCTTC 2 cut(s) 196, 564
PfeI GAWTC 2 cut(s) 4, 232
PkrI GCNGC 4 cut(s) 166, 404, 421, 576
PsiI TTATAA 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 376
PspEI GGTNACC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 212, 249, 631
PsuI RGATCY 1 cut(s) 98
PteI GCGCGC 1 cut(s) 534
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SapI GCTCTTC 2 cut(s) 196, 564
SaqAI TTAA 2 cut(s) 156, 342
SatI GCNGC 4 cut(s) 165, 403, 420, 575
Sau3AI GATC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 4 cut(s) 160, 182, 482, 606
SfuI TTCGAA 2 cut(s) 235, 364
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 279
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 2 cut(s) 494, 575
SspMI CTAG 4 cut(s) 48, 102, 126, 198
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 3 cut(s) 125, 177, 390
TaaI ACNGT 2 cut(s) 290, 566
TaqI TCGA 3 cut(s) 235, 364, 476
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 2 cut(s) 4, 232
Tru1I TTAA 2 cut(s) 156, 342
Tru9I TTAA 2 cut(s) 156, 342
TscAI CASTG 2 cut(s) 455, 569
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 3 cut(s) 164, 402, 419
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 455, 569
XbaI TCTAGA 1 cut(s) 197
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 4 cut(s) 48, 102, 126, 198
ZrmI AGTACT 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.