Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

15248215 .. 15248730

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATCCTCAGCACTCTTCCTTGAGGCCTAACAGGTCCAGCAGTTTGAAATCTAGGTTCACACAAGGGTTTCTTCGAGCTCTGAAGAGATTAAACAGGCAACCACCACCACCATCATCATCACCGCCACAAACTGCATCGTCTCGGATGGAGATGTGCAGACGATATCTGAGAATTAGGATTGCTGCTGATGCATCCATGGCTTCAGCTGTTGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGCAGACAATCCCGGTCCTCTAATTCATCTACCAGAAGAATAAGCATGAAAACGAAATGCTTAGGGAAGAAGATGAAGAAGAAGAAGAAGAAGCTCAAGTGTAGTAAGGAGATCACCGATCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGTTTGTTGGATGAGGCTGCTCACTACATAAGGAGCCTCAGCACTCAGGTACAGGTGATGAAAAGGATTGCGGATGTTTACTCTGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

11.53

Isoelectric Point (pI)

76.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	14 - 88	5.1e-13	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	114 - 160	1e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	125, 494
AcuI	CTGAAG	2 cut(s)	104, 189
AfaI	GTAC	2 cut(s)	396, 474
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	80, 209, 227, 355
AluI	AGCT	4 cut(s)	80, 209, 227, 355
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	185, 261, 440
AspS9I	GGNCC	2 cut(s)	36, 276
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	114, 367, 490
AsuII	TTCGAA	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	36, 276
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	2 cut(s)	9, 461
BbvI	GCAGC	3 cut(s)	172, 273, 427
BccI	CCATC	2 cut(s)	121, 142
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	54, 219
BisI	GCNGC	3 cut(s)	186, 262, 441
BlsI	GCNGC	3 cut(s)	187, 263, 442
Bme1390I	CCNGG	2 cut(s)	274, 399
Bme18I	GGWCC	2 cut(s)	36, 276
BmgT120I	GGNCC	2 cut(s)	36, 276
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	274, 399
BmsI	GCATC	4 cut(s)	146, 181, 203, 406
Bpu10I	CCTNAGC	3 cut(s)	9, 322, 461
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	3 cut(s)	43, 233, 341
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	198, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	198, 411
BseGI	GGATG	5 cut(s)	153, 194, 421, 439, 502
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	23, 161, 475, 482
BseXI	GCAGC	3 cut(s)	172, 273, 427
BsgI	GTGCAG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	372, 379
Bsp19I	CCATGG	2 cut(s)	198, 411
BspACI	CCGC	2 cut(s)	125, 494
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	4 cut(s)	22, 162, 474, 481
BspLI	GGNNCC	1 cut(s)	458
BspQI	GCTCTTC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	198, 411
BssMI	GATC	2 cut(s)	372, 379
BssT1I	CCWWGG	2 cut(s)	198, 411
Bst2UI	CCWGG	1 cut(s)	399
Bst6I	CTCTTC	3 cut(s)	22, 80, 217
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	5 cut(s)	9, 170, 322, 461, 468
BstDSI	CCRYGG	2 cut(s)	198, 411
BstF5I	GGATG	5 cut(s)	153, 194, 421, 439, 502
BstKTI	GATC	2 cut(s)	375, 382
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	372, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 200, 416
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	272, 397
BstV1I	GCAGC	3 cut(s)	172, 273, 427
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	2 cut(s)	198, 411
BtsCI	GGATG	5 cut(s)	153, 194, 421, 439, 502
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	36, 276
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	395, 473
CviAII	CATG	3 cut(s)	199, 307, 412
CviJI	RGCY	9 cut(s)	28, 80, 203, 209, 227, 355, 410, 440, 459
CviKI_1	RGCY	9 cut(s)	28, 80, 203, 209, 227, 355, 410, 440, 459
CviQI	GTAC	2 cut(s)	395, 473
DdeI	CTNAG	5 cut(s)	9, 170, 322, 461, 468
DpnI	GATC	2 cut(s)	374, 381
DpnII	GATC	2 cut(s)	372, 379
Eam1104I	CTCTTC	3 cut(s)	22, 80, 217
EarI	CTCTTC	3 cut(s)	22, 80, 217
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	198, 411
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	36, 276
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	104, 189
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	198, 411
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	198, 411
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	3 cut(s)	202, 310, 415
FaiI	YATR	4 cut(s)	200, 308, 413, 452
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	3 cut(s)	198, 306, 411
Fnu4HI	GCNGC	3 cut(s)	186, 262, 441
FokI	GGATG	5 cut(s)	160, 181, 428, 446, 509
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	186, 262, 441
FspBI	CTAG	2 cut(s)	54, 219
GluI	GCNGC	3 cut(s)	186, 262, 441
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	3 cut(s)	202, 310, 415
HinfI	GANTC	3 cut(s)	4, 232, 253
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	3 cut(s)	114, 367, 490
Hpy166II	GTNNAC	2 cut(s)	60, 502
Hpy188I	TCNGA	4 cut(s)	84, 147, 171, 387
Hpy188III	TCNNGA	2 cut(s)	219, 250
Hpy8I	GTNNAC	2 cut(s)	60, 502
HpyCH4V	TGCA	4 cut(s)	137, 159, 194, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 200, 416
HpyF3I	CTNAG	5 cut(s)	9, 170, 322, 461, 468
Hsp92II	CATG	3 cut(s)	202, 310, 415
Kzo9I	GATC	2 cut(s)	372, 379
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	9 cut(s)	19, 52, 82, 287, 307, 384, 411, 455, 461
Lsp1109I	GCAGC	3 cut(s)	172, 273, 427
LweI	GCATC	4 cut(s)	146, 181, 203, 406
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	2 cut(s)	54, 219
MalI	GATC	2 cut(s)	374, 381
MboI	GATC	2 cut(s)	372, 379
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	174, 283, 511
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	5 cut(s)	18, 18, 289, 430, 470
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	92, 510, 514
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	274, 399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	191, 200, 416
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	2 cut(s)	198, 411
NdeII	GATC	2 cut(s)	372, 379
NlaIII	CATG	3 cut(s)	202, 310, 415
NlaIV	GGNNCC	1 cut(s)	458
NsiI	ATGCAT	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	4, 253
PkrI	GCNGC	3 cut(s)	187, 263, 442
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	36, 276
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	396, 474
RsaNI	GTAC	2 cut(s)	395, 473
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	92, 510, 514
SatI	GCNGC	3 cut(s)	186, 262, 441
Sau3AI	GATC	2 cut(s)	372, 379
Sau96I	GGNCC	2 cut(s)	36, 276
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	274, 399
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	9 cut(s)	38, 59, 82, 211, 229, 357, 400, 474, 480
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	146, 181, 203, 406
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	2 cut(s)	36, 276
SmlI	CTYRAG	3 cut(s)	22, 248, 356
SmoI	CTYRAG	3 cut(s)	22, 248, 356
Sse9I	AATT	3 cut(s)	174, 283, 511
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	125, 494
SspMI	CTAG	2 cut(s)	54, 219
SstI	GAGCTC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	272, 397
StyI	CCWWGG	2 cut(s)	198, 411
TaqI	TCGA	2 cut(s)	76, 256
TasI	AATT	3 cut(s)	174, 283, 511
TfiI	GAWTC	2 cut(s)	4, 253
Tru1I	TTAA	3 cut(s)	92, 510, 514
Tru9I	TTAA	3 cut(s)	92, 510, 514
TseI	GCWGC	3 cut(s)	185, 261, 440
TspDTI	ATGAA	5 cut(s)	17, 276, 323, 350, 497
VpaK11BI	GGWCC	2 cut(s)	36, 276
XbaI	TCTAGA	1 cut(s)	218
XspI	CTAG	2 cut(s)	54, 219
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.