Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

45992752 .. 45993258

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATTCTCAGCACTCGTCTTCGAGGCCTAACAGTTCCAGTTTGAAATCTAGGTTCACACTAGGGTTTCTTCGAGCCCTGAAGAGATTAAACAGGCAACCATCATCATCATCATCATCACAGCCACAAACTGTATCTTCTCCTAGGGAGATGTGTAGACGATATCTGAGAATTAGAATTGCTGCTGATGCATCCATGGCTTCAGCTGTGGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGACAATCCCGGTCTTCTAATTCATCTGCCAGAAGAGTTAGCATGAAAAAGAAATGCTTAGGGGAGAAGATAAAGAAGAAAAAGAAGCTCAAGTGTTGTAAGGAGATCAAAAAGCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGCTTGTTGGATGAGGCTGGCCATTACATAAGGTGCCTCAACACACAGGTAAAGGTGATGACAAGGATTGTGGATAATTACTCTGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.94

Weight (kDa)

11.25

Isoelectric Point (pI)

66.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 87	3e-13	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	108 - 156	2.1e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	101, 186
AfaI	GTAC	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	5 cut(s)	206, 224, 346, 373, 417
AluI	AGCT	5 cut(s)	206, 224, 346, 373, 417
AoxI	GGCC	2 cut(s)	26, 433
ApeKI	GCWGC	2 cut(s)	182, 414
ApoI	RAATTY	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	253
AvrII	CCTAGG	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	12, 264
BbvI	GCAGC	2 cut(s)	169, 426
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	268
BfaI	CTAG	4 cut(s)	51, 62, 144, 216
BisI	GCNGC	2 cut(s)	183, 415
BlnI	CCTAGG	1 cut(s)	143
BlsI	GCNGC	2 cut(s)	184, 416
Bme1390I	CCNGG	2 cut(s)	268, 390
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	268, 390
BmsI	GCATC	3 cut(s)	178, 200, 397
BpiI	GAAGAC	2 cut(s)	12, 264
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	2 cut(s)	230, 332
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	143, 195, 402
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	143, 195, 402
BseGI	GGATG	3 cut(s)	191, 412, 430
BseMII	CTCAG	2 cut(s)	23, 158
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	169, 426
BshFI	GGCC	2 cut(s)	28, 435
BshNI	GGYRCC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	268
BsnI	GGCC	2 cut(s)	28, 435
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	2 cut(s)	195, 402
BspANI	GGCC	2 cut(s)	28, 435
BspCNI	CTCAG	2 cut(s)	22, 159
BspLI	GGNNCC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	143, 195, 402
BssMI	GATC	1 cut(s)	363
BssT1I	CCWWGG	3 cut(s)	143, 195, 402
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	35, 133
Bst6I	CTCTTC	3 cut(s)	77, 214, 286
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	412, 433
BstDEI	CTNAG	3 cut(s)	9, 167, 316
BstDSI	CCRYGG	2 cut(s)	195, 402
BstF5I	GGATG	3 cut(s)	191, 412, 430
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 407
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	266, 388
BstV1I	GCAGC	2 cut(s)	169, 426
BstV2I	GAAGAC	2 cut(s)	12, 264
BsuRI	GGCC	2 cut(s)	28, 435
BtgI	CCRYGG	2 cut(s)	195, 402
BtsCI	GGATG	3 cut(s)	191, 412, 430
Cac8I	GCNNGC	2 cut(s)	412, 433
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	386
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	3 cut(s)	196, 301, 403
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	9, 167, 316
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	3 cut(s)	77, 214, 286
EarI	CTCTTC	3 cut(s)	77, 214, 286
Eco130I	CCWWGG	3 cut(s)	143, 195, 402
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	101, 186
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	164
EcoT14I	CCWWGG	3 cut(s)	143, 195, 402
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	143, 195, 402
FaeI	CATG	3 cut(s)	199, 304, 406
FaiI	YATR	4 cut(s)	197, 302, 404, 443
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	3 cut(s)	195, 300, 402
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	183, 415
FokI	GGATG	3 cut(s)	178, 419, 437
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	183, 415
FspBI	CTAG	4 cut(s)	51, 62, 144, 216
GluI	GCNGC	2 cut(s)	183, 415
HaeIII	GGCC	2 cut(s)	28, 435
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	199, 304, 406
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	229, 250
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	57, 158
Hpy188I	TCNGA	2 cut(s)	168, 378
Hpy188III	TCNNGA	2 cut(s)	216, 247
Hpy8I	GTNNAC	2 cut(s)	57, 158
HpyCH4III	ACNGT	2 cut(s)	35, 133
HpyCH4V	TGCA	2 cut(s)	191, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 407
HpyF3I	CTNAG	3 cut(s)	9, 167, 316
Hsp92II	CATG	3 cut(s)	199, 304, 406
Kzo9I	GATC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	52, 79, 92, 281, 301, 375, 402, 417, 446
Lsp1109I	GCAGC	2 cut(s)	169, 426
LweI	GCATC	3 cut(s)	178, 200, 397
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	4 cut(s)	51, 62, 144, 216
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	9 cut(s)	12, 62, 94, 129, 231, 264, 303, 337, 346
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	6 cut(s)	4, 171, 177, 277, 490, 502
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	3 cut(s)	18, 421, 461
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	268, 390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 407
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	2 cut(s)	195, 402
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	3 cut(s)	199, 304, 406
NlaIV	GGNNCC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	184, 416
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	183, 415
Sau3AI	GATC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	268, 390
SduI	GDGCHC	1 cut(s)	79
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	178, 200, 397
SfuI	TTCGAA	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	245, 347
SmoI	CTYRAG	2 cut(s)	245, 347
Sse9I	AATT	6 cut(s)	4, 171, 177, 277, 490, 502
SseBI	AGGCCT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	51, 62, 144, 216
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	266, 388
StyI	CCWWGG	3 cut(s)	143, 195, 402
TaaI	ACNGT	2 cut(s)	35, 133
TaqI	TCGA	3 cut(s)	23, 73, 253
TasI	AATT	6 cut(s)	4, 171, 177, 277, 490, 502
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	2 cut(s)	182, 414
TspDTI	ATGAA	3 cut(s)	17, 270, 317
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	215
XmaJI	CCTAGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	4 cut(s)	51, 62, 144, 216
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.