Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

28771958 .. 28772431

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1158800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAATTCTCCTAACCCTAATTCATTGAAATCTAGGTTCACTAAAGGGTTGGTGAAAGCCCTAATCAGAATAAACAAAAACCACCCAAGATCATCATCATCATCATCATCAATATCGTCTTCCCCGAGAGAGATCCGGCGGCGATATCATAAAATCAAGACTGCTGCTTATGCATCCATGGCTTGTGCTGTAGGGAGAAGAAGAGCTTGGAGTAGGGCGCTGCTCTGGAAGATACGAAACAAAGCGTGCAACGGCGGCGTTGTAAGGAGATCAATTGATAGTCGCTCTCACTACTCCATTAAGAAAAGAGTTCAGCAGAACAAGGTAAATGAGCTGCGGAAGGTCGTACCAGGCGGTGAAGGCATGGATACTTGGAGCTTGTTGGAGGAGACGGCTCATTACATGAAGTGCCTTACCACACAGGTAAAGGTGATGAGGACAATTGTGGAAGTTTACTCTACTACTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

11.16

Isoelectric Point (pI)

80.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	7 - 81	4e-12	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	107 - 143	2.4e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	139, 255, 337, 354
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	3 cut(s)	206, 334, 378
AluI	AGCT	3 cut(s)	206, 334, 378
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	164, 220, 334
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	64, 368, 442
AvaI	CYCGRG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	151, 207, 321
BceAI	ACGGC	2 cut(s)	268, 408
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	5 cut(s)	140, 165, 221, 256, 335
BlsI	GCNGC	5 cut(s)	141, 166, 222, 257, 336
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	151, 207, 321
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	89, 132, 269
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	4 cut(s)	139, 255, 337, 354
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	89, 132, 269
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	92, 135, 272
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	89, 132, 269
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 179, 255, 360
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	151, 207, 321
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	3 cut(s)	178, 364, 403
CviJI	RGCY	6 cut(s)	59, 182, 206, 334, 378, 395
CviKI_1	RGCY	6 cut(s)	59, 182, 206, 334, 378, 395
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	3 cut(s)	91, 134, 271
DpnII	GATC	3 cut(s)	89, 132, 269
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	3 cut(s)	181, 367, 406
FaiI	YATR	5 cut(s)	150, 171, 179, 365, 404
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FatI	CATG	3 cut(s)	177, 363, 402
Fnu4HI	GCNGC	5 cut(s)	140, 165, 221, 256, 335
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	140, 165, 221, 256, 335
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	5 cut(s)	140, 165, 221, 256, 335
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	181, 367, 406
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	3 cut(s)	64, 368, 442
Hpy166II	GTNNAC	2 cut(s)	39, 454
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	157, 226
Hpy8I	GTNNAC	2 cut(s)	39, 454
HpyAV	CCTTC	2 cut(s)	334, 353
HpyCH4V	TGCA	2 cut(s)	173, 249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 179, 255, 360
Hsp92II	CATG	3 cut(s)	181, 367, 406
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	89, 132, 269
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	5 cut(s)	149, 211, 336, 363, 407
Lsp1109I	GCAGC	3 cut(s)	151, 207, 321
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	33
MalI	GATC	3 cut(s)	91, 134, 271
MboI	GATC	3 cut(s)	89, 132, 269
MboII	GAAGA	4 cut(s)	111, 210, 213, 241
MfeI	CAATTG	2 cut(s)	273, 441
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	4 cut(s)	4, 19, 273, 441
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	2 cut(s)	379, 429
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	2 cut(s)	273, 441
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	170, 179, 255, 360
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	89, 132, 269
NlaIII	CATG	3 cut(s)	181, 367, 406
NsiI	ATGCAT	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	141, 166, 222, 257, 336
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	5 cut(s)	140, 165, 221, 256, 335
Sau3AI	GATC	3 cut(s)	89, 132, 269
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	8 cut(s)	38, 208, 327, 336, 345, 380, 426, 432
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	4 cut(s)	4, 19, 273, 441
SsiI	CCGC	4 cut(s)	139, 255, 337, 354
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	177
TasI	AATT	4 cut(s)	4, 19, 273, 441
TauI	GCSGC	2 cut(s)	142, 258
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseI	GCWGC	3 cut(s)	164, 220, 334
TspDTI	ATGAA	3 cut(s)	12, 17, 419
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.