Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

23877443 .. 23877910

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1151700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATTCTCCAAACCCTAATTCACTGAAATCTAGGTTCACCAAAGGGTTGGTGAAAGCCCTCATCAGAATAAACAAAAACCACCCCAGATCATCATCATCACCATCAATCTCGTCTTCTCCGAGAGAGATCCGGCGACGATATCATAAAATCAAGACCGCTGCTAATGCATCCATGGCTTGTGCTGTAGGGACGAGAAGAGCTTGGAGTAGGGCTCTGCTCTGGAAGATCCAAAACCAAGCGCGCAACAGCGGCGTTGTGAGGAGATCAATTGGCAGTAGCTCTCACTACTCCATGAAGAAAATAATTGAGCAGAACAAGGTAAATGAGCTGCGGAAGGTCGTACCGGGCGGTGAAGGCATGGATACTTGGAGCTTGTTGGAGGAGACTGCTCATTACATGAAGTGCCTTACCACACAGGTAAAGGTGATGAGGACAATTGTGGAAATTTACTCTCCTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

11.03

Isoelectric Point (pI)

73.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	7 - 80	9.2e-14	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	95 - 142	1.1e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	4 cut(s)	159, 252, 334, 351
AclWI	GGATC	2 cut(s)	124, 223
AcsI	RAATTY	2 cut(s)	4, 447
AfaI	GTAC	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	203, 282, 331, 375
AluI	AGCT	4 cut(s)	203, 282, 331, 375
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	124, 223
ApeKI	GCWGC	2 cut(s)	161, 331
ApoI	RAATTY	2 cut(s)	4, 447
AspLEI	GCGC	2 cut(s)	244, 246
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	5 cut(s)	31, 64, 93, 365, 439
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	148, 318
BccI	CCATC	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	162, 253, 332
BlsI	GCNGC	3 cut(s)	163, 254, 333
Bme1390I	CCNGG	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuMI	CCSGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	94
BsePI	GCGCGC	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	277, 398
BseXI	GCAGC	2 cut(s)	148, 318
Bsh1236I	CGCG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	133, 347
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	89, 129, 228, 266
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	159, 252, 334, 351
BspFNI	CGCG	1 cut(s)	244
BspPI	GGATC	2 cut(s)	124, 223
BspQI	GCTCTTC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	174
BssHII	GCGCGC	1 cut(s)	242
BssMI	GATC	4 cut(s)	89, 129, 228, 266
BssT1I	CCWWGG	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	244, 246
BstKTI	GATC	4 cut(s)	92, 132, 231, 269
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	4 cut(s)	89, 129, 228, 266
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 252, 357
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	148, 318
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	129, 228
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	2 cut(s)	129, 228
BsuI	GTATCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	2 cut(s)	244, 246
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	4 cut(s)	175, 295, 361, 400
CviJI	RGCY	7 cut(s)	59, 179, 203, 215, 282, 331, 375
CviKI_1	RGCY	7 cut(s)	59, 179, 203, 215, 282, 331, 375
CviQI	GTAC	1 cut(s)	344
DpnI	GATC	4 cut(s)	91, 131, 230, 268
DpnII	GATC	4 cut(s)	89, 129, 228, 266
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	178, 298, 364, 403
FaiI	YATR	5 cut(s)	147, 176, 296, 362, 401
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	174, 294, 360, 399
Fnu4HI	GCNGC	3 cut(s)	162, 253, 332
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	162, 253, 332
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	243, 245
GluI	GCNGC	3 cut(s)	162, 253, 332
HapII	CCGG	2 cut(s)	133, 347
HhaI	GCGC	2 cut(s)	244, 246
Hin1II	CATG	4 cut(s)	178, 298, 364, 403
Hin6I	GCGC	2 cut(s)	242, 244
HinP1I	GCGC	2 cut(s)	242, 244
HpaII	CCGG	2 cut(s)	133, 347
HphI	GGTGA	5 cut(s)	31, 64, 93, 365, 439
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	68, 123
Hpy188III	TCNNGA	2 cut(s)	154, 223
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	331, 350
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 252, 357
Hsp92II	CATG	4 cut(s)	178, 298, 364, 403
HspAI	GCGC	2 cut(s)	242, 244
Kzo9I	GATC	4 cut(s)	89, 129, 228, 266
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	100, 146, 208, 360, 404
Lsp1109I	GCAGC	2 cut(s)	148, 318
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	33
MalI	GATC	4 cut(s)	91, 131, 230, 268
MboI	GATC	4 cut(s)	89, 129, 228, 266
MboII	GAAGA	4 cut(s)	108, 210, 238, 310
MfeI	CAATTG	2 cut(s)	270, 438
MflI	RGATCY	2 cut(s)	129, 228
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	6 cut(s)	4, 19, 270, 306, 438, 447
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	71, 255, 376, 426
Mph1103I	ATGCAT	1 cut(s)	172
MspA1I	CMGCKG	2 cut(s)	161, 252
MspI	CCGG	2 cut(s)	133, 347
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	2 cut(s)	270, 438
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 252, 357
NciI	CCSGG	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	89, 129, 228, 266
NlaIII	CATG	4 cut(s)	178, 298, 364, 403
NsiI	ATGCAT	1 cut(s)	172
PauI	GCGCGC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	163, 254, 333
PsuI	RGATCY	2 cut(s)	129, 228
PteI	GCGCGC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	193
SatI	GCNGC	3 cut(s)	162, 253, 332
Sau3AI	GATC	4 cut(s)	89, 129, 228, 266
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	38, 205, 284, 324, 333, 342, 377, 423, 429
SfaNI	GCATC	1 cut(s)	179
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	6 cut(s)	4, 19, 270, 306, 438, 447
SsiI	CCGC	4 cut(s)	159, 252, 334, 351
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	174
TasI	AATT	6 cut(s)	4, 19, 270, 306, 438, 447
TauI	GCSGC	1 cut(s)	255
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	161, 331
TspDTI	ATGAA	3 cut(s)	17, 311, 416
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	2 cut(s)	4, 447
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.