Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

18533353 .. 18534564

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAATTCTCCCAACCCTAATTCACTGAAGTATAGGTTCACCAAAGGCTTGCTCAAAGCCCTAGCCAGAATAAACAAGCATCAACCCAGATCATCATCATCTTCTTCAAGAGAGATCCAGCGACGATATAGGAGAATTAAGAATGCTGCATATGCATCCATGGCTTGTGCTGTAGGGACAAGAAGAGCTTGGAGCCGGGAGTTGCTATGGAAGATCCGAAACCAAGCACGAAATGGCGGAGTTTTGAGGAGAATTGGTACTACTACTACTAGTACTCACTACCCCATGAAGAAAAGATCTCAGAAGAAGCCGGTTGTGGCGGGTTTAGGGCGAGTTGATGAGCTGCGGAAGGTTATACCGGGCGGTGAAGGCATGGATACTTGGAGCTTGTTGGAGGAGACAGCCCATTACATGAAGTGCCTTACCACACAGGTAAAGGTCATGAGGACAATTGTGGCAATTTACTCTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.98

Weight (kDa)

11.27

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	237, 320, 346, 363
AclWI	GGATC	2 cut(s)	109, 208
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	259, 274
AgsI	TTSAA	1 cut(s)	108
AhlI	ACTAGT	1 cut(s)	269
AluBI	AGCT	3 cut(s)	188, 343, 387
AluI	AGCT	3 cut(s)	188, 343, 387
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	109, 208
ApeKI	GCWGC	2 cut(s)	146, 343
ApoI	RAATTY	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	197, 360
AsuHPI	GGTGA	2 cut(s)	31, 377
BbvI	GCAGC	2 cut(s)	133, 330
BciVI	GTATCC	1 cut(s)	370
BcnI	CCSGG	2 cut(s)	197, 360
BcoDI	GTCTC	1 cut(s)	392
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	2 cut(s)	62, 270
BfmI	CTRYAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	2 cut(s)	147, 344
BlsI	GCNGC	2 cut(s)	148, 345
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	197, 360
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	197, 360
BmsI	GCATC	2 cut(s)	88, 164
BpuMI	CCSGG	2 cut(s)	197, 360
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bse118I	RCCGGY	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	262, 410
BseXI	GCAGC	2 cut(s)	133, 330
BsiSI	CCGG	3 cut(s)	196, 311, 359
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	89, 114, 213, 296
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	4 cut(s)	237, 320, 346, 363
BspCNI	CTCAG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	109, 208
BspQI	GCTCTTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	89, 114, 213, 296
BssT1I	CCWWGG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	4 cut(s)	92, 117, 216, 299
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	4 cut(s)	89, 114, 213, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 369
BstSCI	CCNGG	2 cut(s)	195, 358
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	133, 330
BstX2I	RGATCY	3 cut(s)	114, 213, 296
BstYI	RGATCY	3 cut(s)	114, 213, 296
BsuI	GTATCC	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	258, 273
CviAII	CATG	5 cut(s)	160, 286, 373, 412, 442
CviQI	GTAC	2 cut(s)	258, 273
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	4 cut(s)	91, 116, 215, 298
DpnII	GATC	4 cut(s)	89, 114, 213, 296
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	5 cut(s)	163, 289, 376, 415, 445
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	159, 285, 372, 411, 441
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	147, 344
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	147, 344
FspBI	CTAG	2 cut(s)	62, 270
GluI	GCNGC	2 cut(s)	147, 344
HapII	CCGG	3 cut(s)	196, 311, 359
Hin1II	CATG	5 cut(s)	163, 289, 376, 415, 445
HpaII	CCGG	3 cut(s)	196, 311, 359
HphI	GGTGA	2 cut(s)	31, 377
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	218, 303
Hpy188III	TCNNGA	2 cut(s)	108, 442
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	343, 362
HpyCH4V	TGCA	2 cut(s)	149, 155
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 369
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	163, 289, 376, 415, 445
Kzo9I	GATC	4 cut(s)	89, 114, 213, 296
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	192, 384
LpnPI	CCDG	7 cut(s)	79, 100, 131, 209, 324, 372, 416
Lsp1109I	GCAGC	2 cut(s)	133, 330
LweI	GCATC	2 cut(s)	88, 164
MaeI	CTAG	2 cut(s)	62, 270
MalI	GATC	4 cut(s)	91, 116, 215, 298
MboI	GATC	4 cut(s)	89, 114, 213, 296
MboII	GAAGA	6 cut(s)	93, 96, 195, 223, 301, 316
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	3 cut(s)	114, 213, 296
MluCI	AATT	6 cut(s)	4, 19, 135, 252, 450, 459
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	3 cut(s)	240, 388, 438
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	138
MspI	CCGG	3 cut(s)	196, 311, 359
MspR9I	CCNGG	2 cut(s)	197, 360
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 369
NciI	CCSGG	2 cut(s)	197, 360
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	4 cut(s)	89, 114, 213, 296
NlaIII	CATG	5 cut(s)	163, 289, 376, 415, 445
NlaIV	GGNNCC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	157
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	148, 345
PspN4I	GGNNCC	1 cut(s)	194
PsuI	RGATCY	3 cut(s)	114, 213, 296
RsaI	GTAC	2 cut(s)	259, 274
RsaNI	GTAC	2 cut(s)	258, 273
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	147, 344
Sau3AI	GATC	4 cut(s)	89, 114, 213, 296
ScaI	AGTACT	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	197, 360
SetI	ASST	7 cut(s)	38, 190, 345, 354, 389, 435, 441
SfaNI	GCATC	2 cut(s)	88, 164
SfcI	CTRYAG	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	6 cut(s)	4, 19, 135, 252, 450, 459
SsiI	CCGC	4 cut(s)	237, 320, 346, 363
SspMI	CTAG	2 cut(s)	62, 270
StyD4I	CCNGG	2 cut(s)	195, 358
StyI	CCWWGG	1 cut(s)	159
TasI	AATT	6 cut(s)	4, 19, 135, 252, 450, 459
TatI	WGTACW	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	146, 343
TspDTI	ATGAA	3 cut(s)	17, 302, 428
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	62, 270
ZrmI	AGTACT	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.