Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

21347822 .. 21350458

Gene Structure 2637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0149400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAACACGATGCACTACATGGAGGTGAACACCACTGGCGCCACCGGCAAGCTCAACGAGGTCGACATCGAGTCCGGCGAGGTCTTGTACCCCGACCCCTCACTTCTCCTCACCACCGCCATCTCCTTCGTCACCGTTCTCTACACTTCCGTCAAGGATGAGATGGAAATGGCAAAGGCTAGTGAGGAAGTTGTGGTGGAGAATTCTAATACATGTGAAGAATGTGCTGCTAGTTTCAAGAAACCTGCATATCTCAAGCAGCATATGCAAAGCCATTCTCTTGAGAGGTCTTTCTCATTTGCTGTCAGGGATTCTTTGGTTAACGTTGGTCCTTTGAAGGACTTCTCCTATGGGCTAAGGATAAATGCAGATGCAAATGCTACTGGAATTGCTAAACAGAGCAATTATGAACTGGTGTGCTGTTCGGGTCATGGAAAGAATGGTTCGCTCTGTGTTCTTCGTCAGTCAATTCGTCCAGAAATGATTAAGAGATCGATGTGTGCAGAAAATGATGCAAAAAATGAAGAGGCTGATATTGAGGAGCTCATCAAAGCAGTTGCAGATCAGGTGGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.1

Weight (kDa)

4.97

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	238, 337
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	2 cut(s)	52, 544
AluI	AGCT	2 cut(s)	52, 544
Alw21I	GWGCWC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	227, 259
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	37, 103, 124
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	214, 271
BccI	CCATC	2 cut(s)	128, 157
BfaI	CTAG	2 cut(s)	180, 231
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	228, 260
BlsI	GCNGC	2 cut(s)	229, 261
Bme18I	GGWCC	1 cut(s)	329
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	361, 502
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	239, 302
Bsa29I	ATCGAT	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	40, 388, 417
BseCI	ATCGAT	1 cut(s)	494
BseGI	GGATG	1 cut(s)	163
BseNI	ACTGG	3 cut(s)	40, 388, 417
BseRI	GAGGAG	2 cut(s)	98, 554
BseXI	GCAGC	2 cut(s)	214, 271
BsgI	GTGCAG	1 cut(s)	522
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	45, 75
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	491, 562
BspACI	CCGC	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	40, 388, 417
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	2 cut(s)	491, 562
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	494, 565
BstMBI	GATC	2 cut(s)	491, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 265
BstNSI	RCATGY	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	214, 271
Bsu15I	ATCGAT	1 cut(s)	494
BsuTUI	ATCGAT	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	19, 213, 431
CviJI	RGCY	6 cut(s)	52, 179, 273, 355, 530, 544
CviKI_1	RGCY	6 cut(s)	52, 179, 273, 355, 530, 544
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	356
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	493, 564
DpnII	GATC	2 cut(s)	491, 562
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	519
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	546
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	22, 216, 434
FaiI	YATR	8 cut(s)	20, 214, 250, 264, 266, 351, 408, 432
FatI	CATG	3 cut(s)	18, 212, 430
FauNDI	CATATG	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	228, 260
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	2 cut(s)	228, 260
FspBI	CTAG	2 cut(s)	180, 231
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	228, 260
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	2 cut(s)	45, 75
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	22, 216, 434
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	64, 322
HindII	GTYRAC	2 cut(s)	64, 322
HinfI	GANTC	2 cut(s)	71, 311
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	45, 75
HphI	GGTGA	3 cut(s)	37, 103, 124
Hpy166II	GTNNAC	3 cut(s)	28, 64, 322
Hpy188III	TCNNGA	3 cut(s)	238, 281, 476
Hpy8I	GTNNAC	3 cut(s)	28, 64, 322
HpyAV	CCTTC	2 cut(s)	136, 331
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	8 cut(s)	13, 248, 268, 368, 374, 503, 515, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 265
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	22, 216, 434
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	491, 562
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	9 cut(s)	21, 58, 88, 258, 292, 369, 398, 489, 551
Lsp1109I	GCAGC	2 cut(s)	214, 271
LweI	GCATC	2 cut(s)	361, 502
MaeI	CTAG	2 cut(s)	180, 231
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	493, 564
MboI	GATC	2 cut(s)	491, 562
MboII	GAAGA	3 cut(s)	230, 449, 536
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	202, 387, 403, 468
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	9 cut(s)	16, 52, 73, 109, 119, 178, 279, 520, 532
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	321, 486
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	45, 75
MwoI	GCNNNNNNNGC	2 cut(s)	45, 265
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	2 cut(s)	491, 562
NlaIII	CATG	3 cut(s)	22, 216, 434
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	216
PciI	ACATGT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	229, 261
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	321, 486
SatI	GCNGC	2 cut(s)	228, 260
Sau3AI	GATC	2 cut(s)	491, 562
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	9 cut(s)	27, 54, 63, 84, 247, 290, 327, 546, 570
SfaNI	GCATC	2 cut(s)	361, 502
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	254, 281
SmoI	CTYRAG	2 cut(s)	254, 281
Sse9I	AATT	4 cut(s)	202, 387, 403, 468
SsiI	CCGC	1 cut(s)	117
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	180, 231
SstI	GAGCTC	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	63, 69, 494
TasI	AATT	4 cut(s)	202, 387, 403, 468
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	321, 486
Tru9I	TTAA	2 cut(s)	321, 486
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	227, 259
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	17, 423, 537
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	180, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.