Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

28423078 .. 28424355

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG157700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGACCGGTACTACTACCACCTCAAGTGGTATCACCCTAAGCACTAAGTCATGTAGAATCAAGTTTGCTCGTAGATTTCTCCGATCCCTTGCGGAAATCAAAAAGCAGAAGCGATCCAGTGCATCATCAAGCGAGGACGAAATCTGTAAGCTGACCAAGAGGATAAAGATGGCAGCTTATTCCTCCATGGCTCGTGCGGTTGGGCCAAGGATGAATTGGAGCAGAGCTCTTCTTTTCAAGCTGCGGAACCGGGTGAGTTACCCTAGGTTGGTGAAGAAAAAGAAAAGGGTTACTGTGAGGAGTAACAAGGTCTCCAGATCAAAGAGTTCAGTTCATATTGACAGAGGCAACAAGCTTCGAAAGCTAGTTCCTGGCGGTAAATCCATGGATTTCATCTGCTTATTGGAAGAAACTGCTCATTACATAACATGCCTTAACACACAGGTGAAGGTCATGCAGGCCATAGCTGATAATCTCTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043565 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

11.19

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	18 - 85	2.3e-11	IBH1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	95, 200, 247, 378
AclWI	GGATC	2 cut(s)	81, 111
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	373
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	7 cut(s)	154, 179, 230, 244, 358, 367, 470
AluI	AGCT	7 cut(s)	154, 179, 230, 244, 358, 367, 470
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	81, 111
AoxI	GGCC	2 cut(s)	206, 462
ApeKI	GCWGC	2 cut(s)	176, 244
AsiGI	ACCGGT	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	6, 206
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	28, 268, 286, 460
AsuII	TTCGAA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	6
AvrII	CCTAGG	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	188, 231
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	267, 368
BisI	GCNGC	2 cut(s)	177, 245
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	2 cut(s)	178, 246
Bme1390I	CCNGG	2 cut(s)	254, 375
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 206
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	254, 375
BmsI	GCATC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	4 cut(s)	189, 209, 266, 387
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	4 cut(s)	189, 209, 266, 387
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	188, 231
BshFI	GGCC	2 cut(s)	208, 464
BshTI	ACCGGT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	9, 253
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	208, 464
Bso31I	GGTCTC	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	86, 116, 320
Bsp19I	CCATGG	2 cut(s)	189, 387
BspACI	CCGC	4 cut(s)	95, 200, 247, 378
BspANI	GGCC	2 cut(s)	208, 464
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	81, 111
BspQI	GCTCTTC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	4 cut(s)	189, 209, 266, 387
BssMI	GATC	3 cut(s)	86, 116, 320
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	4 cut(s)	189, 209, 266, 387
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	41, 48
BstDSI	CCRYGG	2 cut(s)	189, 387
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	89, 119, 323
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	86, 116, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	252, 373
BstV1I	GCAGC	2 cut(s)	188, 231
BsuRI	GGCC	2 cut(s)	208, 464
BtgI	CCRYGG	2 cut(s)	189, 387
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	6, 206
Csp6I	GTAC	1 cut(s)	12
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	5 cut(s)	54, 190, 388, 432, 457
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	41, 48
DpnI	GATC	3 cut(s)	88, 118, 322
DpnII	GATC	3 cut(s)	86, 116, 320
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	4 cut(s)	189, 209, 266, 387
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	189, 209, 266, 387
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	4 cut(s)	189, 209, 266, 387
FaeI	CATG	5 cut(s)	57, 193, 391, 435, 460
FaiI	YATR	8 cut(s)	55, 191, 339, 389, 428, 433, 458, 467
FatI	CATG	5 cut(s)	53, 189, 387, 431, 456
Fnu4HI	GCNGC	2 cut(s)	177, 245
FokI	GGATG	1 cut(s)	226
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	177, 245
FspBI	CTAG	2 cut(s)	267, 368
GluI	GCNGC	2 cut(s)	177, 245
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	208, 464
HapII	CCGG	2 cut(s)	9, 253
Hin1II	CATG	5 cut(s)	57, 193, 391, 435, 460
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	2 cut(s)	9, 253
HphI	GGTGA	4 cut(s)	28, 268, 286, 460
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	125, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	41, 48
Hsp92II	CATG	5 cut(s)	57, 193, 391, 435, 460
Kzo9I	GATC	3 cut(s)	86, 116, 320
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	22, 133, 266, 331, 360, 387, 431, 446
Lsp1109I	GCAGC	2 cut(s)	188, 231
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	2 cut(s)	267, 368
MaeIII	GTNAC	3 cut(s)	260, 292, 305
MalI	GATC	3 cut(s)	88, 118, 322
MboI	GATC	3 cut(s)	86, 116, 320
MboII	GAAGA	3 cut(s)	224, 289, 422
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	6 cut(s)	34, 130, 156, 196, 294, 341
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	2 cut(s)	9, 253
MspR9I	CCNGG	2 cut(s)	254, 375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	2 cut(s)	189, 387
NdeII	GATC	3 cut(s)	86, 116, 320
NlaIII	CATG	5 cut(s)	57, 193, 391, 435, 460
NlaIV	GGNNCC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	60
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	178, 246
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	2 cut(s)	6, 206
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	177, 245
Sau3AI	GATC	3 cut(s)	86, 116, 320
Sau96I	GGNCC	2 cut(s)	6, 206
ScrFI	CCNGG	2 cut(s)	254, 375
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	4 cut(s)	95, 200, 247, 378
SspMI	CTAG	2 cut(s)	267, 368
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	252, 373
StyI	CCWWGG	4 cut(s)	189, 209, 266, 387
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	2 cut(s)	176, 244
TspDTI	ATGAA	3 cut(s)	230, 326, 385
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmaJI	CCTAGG	1 cut(s)	266
XspI	CTAG	2 cut(s)	267, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.