Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

23870952 .. 23871497

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1151600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAATCCAAAGCGCTTGTCTTTAAGGCCTAATTATACCACGTTTAAATCTAGGTTCGCAAAAGGGTTTCTTCAAGCCTTGAAGAGAATAAATACGCAAAGATCTATATCATCAACGAATGTACTACCACCTTCTCCTAGGGAGATGTGTAGAAGGTATTTGAGTGTTAAGAATGCTGCTGATGCATCCATGGCTTCGGCTGTTGGGACTAGAAGAGCTTGGAGCCGCGCTTTGCTTACGAAGATTAATCGAAGCCACAAGGGTTCACGGATTTTTAATTGTTCATCAAGAAGAACTGACAACAGTAAGAAGATGATGATGATGACAATGATGAAGAAGTGTGATGACGGTGATGAGGAGGAGGAGGAGAAGGAGGAGAAAGAGACTGGTATTGTTTGCGAGGTGAACCAACTTCGAAAGTTCGTACCAGGTGGGGAAGCCATGGATATTTGCAGCTTGTTAGACGAGGCTGCACATTACATCAAGTGTCTCAACACTCAGGTAAAAGTGATGAGAAAGATTGCAGATATCTGCTCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.54

Weight (kDa)

9.73

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 85	3.5e-16	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	132 - 169	6.4e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	123, 426
AfeI	AGCGCT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	74, 82
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	2 cut(s)	218, 456
AluI	AGCT	2 cut(s)	218, 456
Alw26I	GTCTC	2 cut(s)	377, 494
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	176, 453, 470, 539
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	246
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	15, 230
AsuHPI	GGTGA	2 cut(s)	362, 415
AsuII	TTCGAA	1 cut(s)	415
AvrII	CCTAGG	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	163, 457, 465, 526
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	377, 494
BfaI	CTAG	3 cut(s)	51, 138, 210
BfoI	RGCGCY	1 cut(s)	16
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	5 cut(s)	177, 226, 454, 471, 540
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	5 cut(s)	178, 227, 455, 472, 541
Bme1390I	CCNGG	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	172, 194
Bpu14I	TTCGAA	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	137, 189, 441
Bse1I	ACTGG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	137, 189, 441
BseGI	GGATG	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	5 cut(s)	371, 374, 377, 380, 389
BseXI	GCAGC	4 cut(s)	163, 457, 465, 526
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	377, 494
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	101
Bsp19I	CCATGG	2 cut(s)	189, 441
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	137, 189, 441
BssMI	GATC	1 cut(s)	101
BssT1I	CCWWGG	3 cut(s)	137, 189, 441
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	305, 350
Bst6I	CTCTTC	2 cut(s)	77, 208
BstBI	TTCGAA	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	189, 441
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	15, 230
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	377, 494
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	163, 457, 465, 526
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	2 cut(s)	189, 441
BtsCI	GGATG	1 cut(s)	185
CfoI	GCGC	2 cut(s)	15, 230
CsiI	ACCWGGT	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	122, 425
CviAII	CATG	2 cut(s)	190, 442
CviQI	GTAC	2 cut(s)	122, 425
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	77, 208
EarI	CTCTTC	2 cut(s)	77, 208
Eco130I	CCWWGG	3 cut(s)	137, 189, 441
Eco147I	AGGCCT	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	529
Eco47III	AGCGCT	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	137, 189, 441
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	137, 189, 441
FaeI	CATG	2 cut(s)	193, 445
FaiI	YATR	4 cut(s)	36, 107, 191, 443
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	189, 441
Fnu4HI	GCNGC	5 cut(s)	177, 226, 454, 471, 540
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	177, 226, 454, 471, 540
FspBI	CTAG	3 cut(s)	51, 138, 210
GlaI	GCGC	2 cut(s)	14, 229
GluI	GCNGC	5 cut(s)	177, 226, 454, 471, 540
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	15, 230
Hin1II	CATG	2 cut(s)	193, 445
Hin6I	GCGC	2 cut(s)	13, 228
HinP1I	GCGC	2 cut(s)	13, 228
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	362, 415
Hpy166II	GTNNAC	2 cut(s)	266, 406
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	2 cut(s)	266, 406
HpyAV	CCTTC	3 cut(s)	141, 147, 364
HpyCH4III	ACNGT	2 cut(s)	305, 350
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	185, 453, 473, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	193, 445
HspAI	GCGC	2 cut(s)	13, 228
Kzo9I	GATC	1 cut(s)	101
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	4 cut(s)	372, 414, 441, 485
Lsp1109I	GCAGC	4 cut(s)	163, 457, 465, 526
LweI	GCATC	2 cut(s)	172, 194
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	3 cut(s)	51, 138, 210
MaeII	ACGT	1 cut(s)	41
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	7 cut(s)	62, 94, 225, 253, 303, 322, 346
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	2 cut(s)	31, 277
MnlI	CCTC	7 cut(s)	349, 352, 355, 358, 367, 394, 460
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	5 cut(s)	23, 45, 168, 246, 276
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NcoI	CCATGG	2 cut(s)	189, 441
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	193, 445
NlaIV	GGNNCC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	178, 227, 455, 472, 541
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	123, 426
RsaNI	GTAC	2 cut(s)	122, 425
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	23, 45, 168, 246, 276
SatI	GCNGC	5 cut(s)	177, 226, 454, 471, 540
Sau3AI	GATC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	9 cut(s)	44, 56, 133, 158, 220, 405, 433, 458, 504
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	172, 194
SfuI	TTCGAA	1 cut(s)	415
Sse9I	AATT	2 cut(s)	31, 277
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	51, 138, 210
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	3 cut(s)	137, 189, 441
TaaI	ACNGT	2 cut(s)	305, 350
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	250, 415
TasI	AATT	2 cut(s)	31, 277
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	5 cut(s)	23, 45, 168, 246, 276
Tru9I	TTAA	5 cut(s)	23, 45, 168, 246, 276
TseI	GCWGC	4 cut(s)	176, 453, 470, 539
TspDTI	ATGAA	3 cut(s)	17, 273, 347
TspGWI	ACGGA	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	246
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	3 cut(s)	51, 138, 210
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.