Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Forward (+)

15308884 .. 15310452

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAAAAAACCCTAAAATTGTATCTCCTGACCATGACTAATATAACTACAACCGGTGTCACCTTAAACATCAAATCCTGCAGAACCAAGTTTGCTCATAGATTTGTTCGATCCCTCTTGCAAATCAGAAACCATGCTCCGCCCAGTTCATCGTCGTCTTCAGAGGAAAAACTGATCCAAAAGCGCAGGCAAAGAATAAAGATAGCAGCTTATTTATCCATGGCTCATGCTGTTGGGCCAAGGATGAACTGGAGCAGGGCTCTTCTCTTTAAGCTTCGAAACCGGGCCTGCAGGCACCGTAAGAAGAAAAGGATTGTTGTGATCAGAAGGAAGACTAAAAAGGCCTCAAGATCATCACAGGGATCGGTTCCTGTGGATCAAGCAAAAAAGCTTCGGCGGCTCGTTCCTGGGGCCAAGTCCATGGATTTGTGCAGCTTGCTGGAGGAAACTGCTCACTACATAACATGCCTTTCCACGCAGATTAAGGTGATGCAGGCTTTAGCTGATCATCTTTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043565 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.79

Weight (kDa)

11.52

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	2 cut(s)	140, 397
AclWI	GGATC	4 cut(s)	105, 169, 370, 384
AcuI	CTGAAG	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	5 cut(s)	209, 274, 391, 435, 503
AluI	AGCT	5 cut(s)	209, 274, 391, 435, 503
AlwI	GGATC	4 cut(s)	105, 169, 370, 384
AoxI	GGCC	4 cut(s)	236, 285, 342, 411
ApeKI	GCWGC	2 cut(s)	206, 432
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	236, 285, 411
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	52, 499
AsuII	TTCGAA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	150, 338
BbvI	GCAGC	2 cut(s)	218, 444
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	2 cut(s)	321, 505
BcnI	CCSGG	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	79, 289
BisI	GCNGC	3 cut(s)	207, 398, 433
BlsI	GCNGC	3 cut(s)	208, 399, 434
Bme1390I	CCNGG	2 cut(s)	284, 408
BmgT120I	GGNCC	3 cut(s)	236, 285, 411
BmiI	GGNNCC	3 cut(s)	296, 369, 412
BmrFI	CCNGG	2 cut(s)	284, 408
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	2 cut(s)	150, 338
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	2 cut(s)	271, 461
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	4 cut(s)	219, 239, 407, 420
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	144, 254
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	219, 239, 407, 420
BseGI	GGATG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	144, 254
BseXI	GCAGC	2 cut(s)	218, 444
BsgI	GTGCAG	1 cut(s)	451
BshFI	GGCC	4 cut(s)	238, 287, 344, 413
BshNI	GGYRCC	1 cut(s)	294
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 283
BsnI	GGCC	4 cut(s)	238, 287, 344, 413
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
Bsp19I	CCATGG	2 cut(s)	219, 420
BspACI	CCGC	2 cut(s)	140, 397
BspANI	GGCC	4 cut(s)	238, 287, 344, 413
BspLI	GGNNCC	3 cut(s)	296, 369, 412
BspMAI	CTGCAG	2 cut(s)	83, 293
BspPI	GGATC	4 cut(s)	105, 169, 370, 384
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	144, 254
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	219, 239, 407, 420
BssMI	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
BssT1I	CCWWGG	3 cut(s)	219, 239, 420
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	5 cut(s)	188, 289, 293, 437, 495
BstDSI	CCRYGG	2 cut(s)	219, 420
BstF5I	GGATG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	7 cut(s)	113, 177, 324, 353, 365, 379, 508
BstMBI	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	2 cut(s)	282, 406
BstSFI	CTRYAG	2 cut(s)	79, 289
BstV1I	GCAGC	2 cut(s)	218, 444
BstV2I	GAAGAC	2 cut(s)	150, 338
BstXI	CCANNNNNNTGG	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	238, 287, 344, 413
BtgI	CCRYGG	2 cut(s)	219, 420
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	5 cut(s)	188, 289, 293, 437, 495
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	236, 285, 411
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	6 cut(s)	34, 134, 220, 227, 421, 465
DpnI	GATC	7 cut(s)	112, 176, 323, 352, 364, 378, 507
DpnII	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	3 cut(s)	219, 239, 420
Eco147I	AGGCCT	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	3 cut(s)	219, 239, 420
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	3 cut(s)	219, 239, 420
FaeI	CATG	6 cut(s)	37, 137, 223, 230, 424, 468
FaiI	YATR	9 cut(s)	35, 44, 99, 135, 221, 228, 422, 461, 466
FatI	CATG	6 cut(s)	33, 133, 219, 226, 420, 464
FbaI	TGATCA	2 cut(s)	321, 505
Fnu4HI	GCNGC	3 cut(s)	207, 398, 433
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	207, 398, 433
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	207, 398, 433
GsuI	CTGGAG	2 cut(s)	271, 461
HaeIII	GGCC	4 cut(s)	238, 287, 344, 413
HapII	CCGG	2 cut(s)	54, 283
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	37, 137, 223, 230, 424, 468
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	2 cut(s)	272, 389
HpaII	CCGG	2 cut(s)	54, 283
HphI	GGTGA	2 cut(s)	52, 499
Hpy188I	TCNGA	3 cut(s)	128, 163, 326
Hpy188III	TCNNGA	2 cut(s)	28, 348
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	81, 121, 291, 432, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
Hsp92II	CATG	6 cut(s)	37, 137, 223, 230, 424, 468
HspAI	GCGC	1 cut(s)	184
Ksp22I	TGATCA	2 cut(s)	321, 505
Kzo9I	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	142, 252
Lsp1109I	GCAGC	2 cut(s)	218, 444
LweI	GCATC	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	7 cut(s)	112, 176, 323, 352, 364, 378, 507
MboI	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
MboII	GAAGA	4 cut(s)	150, 254, 316, 343
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	4 cut(s)	125, 157, 355, 436
MseI	TTAA	3 cut(s)	65, 270, 483
MspI	CCGG	2 cut(s)	54, 283
MspR9I	CCNGG	2 cut(s)	284, 408
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	2 cut(s)	219, 420
NdeII	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
NlaIII	CATG	6 cut(s)	37, 137, 223, 230, 424, 468
NlaIV	GGNNCC	3 cut(s)	296, 369, 412
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	468
NspV	TTCGAA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	267
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	208, 399, 434
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	296, 369, 412
PspPI	GGNCC	3 cut(s)	236, 285, 411
PstI	CTGCAG	2 cut(s)	83, 293
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	65, 270, 483
SatI	GCNGC	3 cut(s)	207, 398, 433
Sau3AI	GATC	7 cut(s)	110, 174, 321, 350, 362, 376, 505
Sau96I	GGNCC	3 cut(s)	236, 285, 411
SbfI	CCTGCAGG	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	284, 408
SdaI	CCTGCAGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	65, 211, 276, 393, 437, 489, 505
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	2 cut(s)	79, 289
SfuI	TTCGAA	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse8387I	CCTGCAGG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	2 cut(s)	140, 397
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	282, 406
StyI	CCWWGG	3 cut(s)	219, 239, 420
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	109, 277
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	3 cut(s)	65, 270, 483
Tru9I	TTAA	3 cut(s)	65, 270, 483
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	206, 432
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	17, 138, 260
XceI	RCATGY	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.