Rh6CG264800

Transcription factor IBH1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002357
Physical Location & Seq
Reverse (-)
43764472 .. 43764783
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG264800.1

Sequence Viewer

Length: 312 bp
ATGGCTTCAGCTGTGGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGACAATCCCGGTCTTCTAATTCATCTGCCAGAAGAGTTAGCATGAAAAAGAAATGCTTAGGGGAGAAGATAAAGAAGAAAAAGAAGCTCAAGTGTTGTAAGGAGATCAAAAAGCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGCTTGTTGGATGAGGCTGCCCATTACATAAGGTGCCTCAACACACAGGTAAAGGTGATGACAAGGATTGTGGATAATTACTCTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.66

Weight (kDa)

10.52

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 43 - 91 1.8e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AfaI GTAC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 5 cut(s) 11, 29, 151, 178, 222
AluI AGCT 5 cut(s) 11, 29, 151, 178, 222
ApeKI GCWGC 2 cut(s) 219, 236
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 223, 231
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 220, 237
BlsI GCNGC 2 cut(s) 221, 238
Bme1390I CCNGG 2 cut(s) 73, 195
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 73, 195
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 35, 137
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 217, 235
BseXI GCAGC 2 cut(s) 223, 231
BshNI GGYRCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 19, 91
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 217, 235
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 71, 193
BstV1I GCAGC 2 cut(s) 223, 231
BstV2I GAAGAC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 217, 235
Cac8I GCNNGC 1 cut(s) 217
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 2 cut(s) 106, 208
CviJI RGCY 8 cut(s) 5, 11, 29, 151, 178, 206, 222, 236
CviKI_1 RGCY 8 cut(s) 5, 11, 29, 151, 178, 206, 222, 236
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 19, 91
EarI CTCTTC 2 cut(s) 19, 91
Eco130I CCWWGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 109, 211
FaiI YATR 3 cut(s) 107, 209, 248
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 2 cut(s) 105, 207
Fnu4HI GCNGC 2 cut(s) 220, 237
FokI GGATG 2 cut(s) 224, 242
Fsp4HI GCNGC 2 cut(s) 220, 237
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 220, 237
HapII CCGG 1 cut(s) 73
Hin1II CATG 2 cut(s) 109, 211
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 34, 55
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 21, 52
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 2 cut(s) 109, 211
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 86, 106, 180, 207, 251
Lsp1109I GCAGC 2 cut(s) 223, 231
LweI GCATC 1 cut(s) 202
MabI ACCWGGT 1 cut(s) 193
MaeI CTAG 1 cut(s) 21
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 5 cut(s) 36, 69, 108, 142, 151
MluCI AATT 3 cut(s) 82, 295, 307
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 2 cut(s) 226, 266
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 73, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 168
NlaIII CATG 2 cut(s) 109, 211
NlaIV GGNNCC 1 cut(s) 254
NspV TTCGAA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 221, 238
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 19
SatI GCNGC 2 cut(s) 220, 237
Sau3AI GATC 1 cut(s) 168
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 73, 195
SetI ASST 9 cut(s) 13, 31, 153, 180, 196, 224, 254, 270, 276
SexAI ACCWGGT 1 cut(s) 193
SfaNI GCATC 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 58
SmlI CTYRAG 2 cut(s) 50, 152
SmoI CTYRAG 2 cut(s) 50, 152
Sse9I AATT 3 cut(s) 82, 295, 307
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 71, 193
StyI CCWWGG 1 cut(s) 207
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 82, 295, 307
TfiI GAWTC 1 cut(s) 55
TseI GCWGC 2 cut(s) 219, 236
TspDTI ATGAA 2 cut(s) 75, 122
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.