Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002357

Physical Location & Seq

Genomic Coordinates Reverse (-)

16549782 .. 16550339

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAATCCAAAGCGCTTGTCTTTGAGGCCTAATTATACCACGTTTAAATCTAGGTTCGCGAAAGGGTTTCTTCAAGCCTTGAAGAGAATAAATACGCAAAGATCTATATCATCAACGAATGTACTACCACCTTCTCCTAGGGAGGTGTGTAGAAGGTATTTGAGTGTTAAGAATGCTGCTGATGCATCTATGGCTTCGGCTGTTGGGACTAGAAGAGCTTGGAGCCGTGCTTTGCTTACGAAGATTAATCGAAGCCACAAGGGTTCACGGATTTATAATTGTTCATCAAGAAGAACTGACAACAGTAAGAAGATGATGATGATGATGACAATGATGACGAAGTGTGATGACGGTGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGACTGGTATTGTTTGCGAGGTGAACCAGCTTCGAAAGTTCGTACCAGGTGGGGAAGCCATGGATATTTGCAGCTTGTTAGACGAGGCTGCACATTACATCAAGTGTCTCAACACTCAGGTAAAAGTGATGAGAAAGATTGCAGATATCTGCTCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.01

Weight (kDa)

9.21

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 85	5e-16	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	136 - 173	7.4e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43060
fragaria_vesca	FvH4_2g17750 FvH4_2g17760
malus_domestica	MD05G1158700.v1.1 MD05G1158800.v1.1 MD10G1151600.v1.1 MD10G1151700.v1.1
prunus_persica	Prupe.1G178500_v2.0.a1 Prupe.8G190000_v2.0.a1 Prupe.8G190100_v2.0.a1
pyrus_communis	pycom05g15070 pycom10g13070
rosa_chinensis	RchiOBHm_Chr4g0409781 RchiOBHm_Chr6g0282781 RchiOBHm_Chr6g0282791
rosa_laevigata	RLG00000008523 RLG00000012869 RLG00000012870
rosa_multiflora	Rmu_sc0005198.1_g000008 Rmu_sc0016354.1_g000007 Rmu_sc0016354.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354330 Rroxscaffold_7G00186060 Rroxscaffold_7G00186070
rosa_rugosa	Rorug06G0149400 Rorug06G0149800
rosa_samantha	Rh4AG158000 Rh4BG157700 Rh4CG168500 Rh4DG152600 Rh6AG262600 Rh6AG262700 Rh6BG265500 Rh6BG265600 Rh6CG264800 Rh6CG264900 Rh6DG257300 Rh6DG257400
rosa_wichuraiana	Rw0G017470 Rw4G013050 Rw6G022680 Rw6G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccII	CGCG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	123, 438
AfeI	AGCGCT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	74, 82
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	218, 424, 468
AluI	AGCT	3 cut(s)	218, 424, 468
Alw26I	GTCTC	2 cut(s)	389, 506
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	176, 465, 482, 551
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	246
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	365, 427
AsuII	TTCGAA	1 cut(s)	427
AvrII	CCTAGG	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	163, 469, 477, 538
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	389, 506
BfaI	CTAG	3 cut(s)	51, 138, 210
BfoI	RGCGCY	1 cut(s)	16
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	4 cut(s)	177, 466, 483, 552
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	4 cut(s)	178, 467, 484, 553
Bme1390I	CCNGG	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	172, 194
Bpu14I	TTCGAA	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	137, 453
Bse1I	ACTGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	137, 453
BseJI	GATNNNNATC	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	4 cut(s)	163, 469, 477, 538
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	389, 506
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	101
Bsp19I	CCATGG	1 cut(s)	453
Bsp68I	TCGCGA	1 cut(s)	59
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	137, 453
BssMI	GATC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	137, 453
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	305, 353
Bst6I	CTCTTC	2 cut(s)	77, 208
BstBI	TTCGAA	1 cut(s)	427
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	389, 506
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	163, 469, 477, 538
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	453
BtuMI	TCGCGA	1 cut(s)	59
CfoI	GCGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	122, 437
CviAII	CATG	1 cut(s)	454
CviQI	GTAC	2 cut(s)	122, 437
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	77, 208
EarI	CTCTTC	2 cut(s)	77, 208
Eco130I	CCWWGG	2 cut(s)	137, 453
Eco147I	AGGCCT	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	541
Eco47III	AGCGCT	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	137, 453
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	137, 453
FaeI	CATG	1 cut(s)	457
FaiI	YATR	5 cut(s)	36, 107, 191, 276, 455
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	177, 466, 483, 552
Fsp4HI	GCNGC	4 cut(s)	177, 466, 483, 552
FspBI	CTAG	3 cut(s)	51, 138, 210
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	4 cut(s)	177, 466, 483, 552
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	365, 427
Hpy166II	GTNNAC	2 cut(s)	266, 418
Hpy188III	TCNNGA	2 cut(s)	58, 288
Hpy8I	GTNNAC	2 cut(s)	266, 418
HpyAV	CCTTC	2 cut(s)	141, 147
HpyCH4III	ACNGT	2 cut(s)	305, 353
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	185, 465, 485, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	101
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	5 cut(s)	384, 426, 434, 453, 497
Lsp1109I	GCAGC	4 cut(s)	163, 469, 477, 538
LweI	GCATC	2 cut(s)	172, 194
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	3 cut(s)	51, 138, 210
MaeII	ACGT	1 cut(s)	41
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	6 cut(s)	62, 94, 225, 253, 303, 322
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	2 cut(s)	31, 277
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	3 cut(s)	45, 168, 246
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	1 cut(s)	224
NruI	TCGCGA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	178, 467, 484, 553
PshBI	ATTAAT	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	101
RruI	TCGCGA	1 cut(s)	59
RsaI	GTAC	2 cut(s)	123, 438
RsaNI	GTAC	2 cut(s)	122, 437
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	45, 168, 246
SatI	GCNGC	4 cut(s)	177, 466, 483, 552
Sau3AI	GATC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	441
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	172, 194
SfuI	TTCGAA	1 cut(s)	427
Sse9I	AATT	2 cut(s)	31, 277
SseBI	AGGCCT	1 cut(s)	28
SspMI	CTAG	3 cut(s)	51, 138, 210
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	2 cut(s)	137, 453
TaaI	ACNGT	2 cut(s)	305, 353
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	250, 427
TasI	AATT	2 cut(s)	31, 277
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	45, 168, 246
Tru9I	TTAA	3 cut(s)	45, 168, 246
TseI	GCWGC	4 cut(s)	176, 465, 482, 551
TspDTI	ATGAA	2 cut(s)	17, 273
TspGWI	ACGGA	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	246
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	3 cut(s)	51, 138, 210
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.