Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

19582658 .. 19583618

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGGGGAATTATCATTCGTTCCAAAATCCAATCCCTCGATACCAGAATTACAACTTCGGGAGCAGCTCATCTAATCATCAACATGAACATGATGGGTTAGTGGTGGTGGTGGAGGATCAACAGCAAGAAGAAAGCATGATGGTAAAAGAACAAGACAGGCTACTTCCGATAGCAAACGTAGGAAGGATCATGAAGAACATCCTCCCAGCAAACGCAAAGGTCTCTAAAGAAGCCAAAGAGACTATGCAAGAATGTGTGTCCGAGTTCATTAGCTTCGTCACGGGAGAAGCATCCGATAAATGCCACAAGGAGAAGCGAAAGACCGTTAATGGAGACGATATCTGTTGGGCTATGGCTAATCTAGGGTTTGATGATTACGCCGCCCAGCTCAAGAAGTACTTACATCGTTACCGAGTTCTCGAAGGTGAGAAACCTAATCATCACGGCAAAGGAGGACCTAAATCCTCGCCAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

160

Amino Acids

18.12

Weight (kDa)

6.44

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	41 - 119	5e-09	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	55 - 119	1.2e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 384
AclWI	GGATC	2 cut(s)	126, 197
AfaI	GTAC	1 cut(s)	401
AluBI	AGCT	3 cut(s)	69, 276, 391
AluI	AGCT	3 cut(s)	69, 276, 391
Alw26I	GTCTC	3 cut(s)	229, 236, 330
AlwI	GGATC	2 cut(s)	126, 197
ApeKI	GCWGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	89, 136
BceAI	ACGGC	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	229, 236, 330
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	67, 384
BlsI	GCNGC	2 cut(s)	68, 385
BmcAI	AGTACT	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	229
BseGI	GGATG	2 cut(s)	201, 293
BseXI	GCAGC	1 cut(s)	78
BseYI	CCCAGC	2 cut(s)	208, 387
BsmAI	GTCTC	3 cut(s)	229, 236, 330
BsmBI	CGTCTC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	118, 189
BspACI	CCGC	2 cut(s)	5, 384
BspHI	TCATGA	1 cut(s)	192
BspPI	GGATC	2 cut(s)	126, 197
BspTNI	GGTCTC	1 cut(s)	229
BssMI	GATC	2 cut(s)	118, 189
Bst4CI	ACNGT	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	201, 293
BstKTI	GATC	2 cut(s)	121, 192
BstMAI	GTCTC	3 cut(s)	229, 236, 330
BstMBI	GATC	2 cut(s)	118, 189
BstV1I	GCAGC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	201, 293
CciI	TCATGA	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	4 cut(s)	86, 92, 139, 193
CviJI	RGCY	7 cut(s)	69, 163, 236, 276, 353, 359, 391
CviKI_1	RGCY	7 cut(s)	69, 163, 236, 276, 353, 359, 391
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	2 cut(s)	120, 191
DpnII	GATC	2 cut(s)	118, 189
Eco31I	GGTCTC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	4 cut(s)	89, 95, 142, 196
FaiI	YATR	6 cut(s)	87, 93, 140, 194, 248, 356
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	4 cut(s)	85, 91, 138, 192
Fnu4HI	GCNGC	2 cut(s)	67, 384
FokI	GGATG	2 cut(s)	188, 280
Fsp4HI	GCNGC	2 cut(s)	67, 384
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	67, 384
GsaI	CCCAGC	2 cut(s)	212, 391
Hin1II	CATG	4 cut(s)	89, 95, 142, 196
HphI	GGTGA	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	171, 265, 298
Hpy188III	TCNNGA	4 cut(s)	61, 193, 394, 422
HpyAV	CCTTC	2 cut(s)	180, 419
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	89, 95, 142, 196
Kzo9I	GATC	2 cut(s)	118, 189
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	59, 145, 222, 401
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	280, 410
MalI	GATC	2 cut(s)	120, 191
MboI	GATC	2 cut(s)	118, 189
MboII	GAAGA	2 cut(s)	143, 208
MluCI	AATT	3 cut(s)	10, 49, 478
MnlI	CCTC	5 cut(s)	48, 109, 215, 449, 478
MseI	TTAA	2 cut(s)	330, 481
MslI	CAYNNNNRTG	2 cut(s)	84, 90
NdeII	GATC	2 cut(s)	118, 189
NlaIII	CATG	4 cut(s)	89, 95, 142, 196
NmuCI	GTSAC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	68, 385
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspFI	CCCAGC	2 cut(s)	208, 387
PspPI	GGNCC	1 cut(s)	458
PspPPI	RGGWCCY	1 cut(s)	458
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	84, 90
SaqAI	TTAA	2 cut(s)	330, 481
SatI	GCNGC	2 cut(s)	67, 384
Sau3AI	GATC	2 cut(s)	118, 189
Sau96I	GGNCC	1 cut(s)	458
ScaI	AGTACT	1 cut(s)	401
SetI	ASST	8 cut(s)	71, 183, 225, 278, 393, 430, 439, 463
SfaNI	GCATC	1 cut(s)	302
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	84, 90
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	10, 49, 478
SsiI	CCGC	2 cut(s)	5, 384
SspMI	CTAG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	40, 423
TasI	AATT	3 cut(s)	10, 49, 478
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	330, 481
Tru9I	TTAA	2 cut(s)	330, 481
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	102, 209, 259
VpaK11BI	GGWCC	1 cut(s)	458
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.