Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

37152321 .. 37152947

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1334200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTGGAAAAAGAAATCAAACGTGTAGTCCTGTTGGAAGCCCGCTGTCTGGGAACGTCTCAGACAGCGGTTCCAAAGAGCAAGACAGGTTCCTCCCCATTGCGAACGTGAGCCGTATCATGAAGAAGTCCCTGCCTGCAAATGCCAAGATTTCAAAGGAAGCCAAGGAGACGGTCCAAGAATGTGTATCGGAGTTCATAAGCTTCATCACAGGCGAAGCATCGGACAAGTGCCAGAGAGAAAAGAGAAAGACTATCAACGGGGATGACCTACTTTGGGCCATGACAACTCTGGGATTCGAGAATTATGTTGGACCCTTGAAATTGTATCTCAACAAGTACAGGGAGACTGAGGGAGATAAGAACTCCATGGCCAGAGAAGAAGACCACCCTCATGGTTCTAATGATCAAACCAACACTATTTCAAGTAACAAGATGGATTTTTCTAATGGAGGTTTCTATTCAGTTGGGGGACGACAGCAGCAGCAGCAAGTGATGACTTCAAATTACAATATGGCGAGTAGTCATGGCGCTTACAATTTCAGTAGGATTCATGAGAGTGGAGATGGCAGTGCAAACAGAGATTTGGCAGCTCATCATCATATTCATAACGGGATAGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

209

Amino Acids

23.01

Weight (kDa)

7.09

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	31 - 95	4.4e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 69
AcoI	YGGCCR	1 cut(s)	372
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	50, 277
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	156, 322, 426, 504
AluBI	AGCT	2 cut(s)	204, 593
AluI	AGCT	2 cut(s)	204, 593
Alw26I	GTCTC	3 cut(s)	64, 164, 341
AoxI	GGCC	2 cut(s)	279, 372
ApeKI	GCWGC	4 cut(s)	481, 484, 487, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	175, 279, 314
AvaII	GGWCC	2 cut(s)	175, 314
BalI	TGGCCA	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	493, 496, 499, 602
BccI	CCATC	3 cut(s)	430, 560, 615
BceAI	ACGGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	64, 164, 341
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	4 cut(s)	482, 485, 488, 591
BlsI	GCNGC	4 cut(s)	483, 486, 489, 592
Bme18I	GGWCC	2 cut(s)	175, 314
BmgT120I	GGNCC	3 cut(s)	175, 279, 314
BmiI	GGNNCC	3 cut(s)	73, 92, 316
BmsI	GCATC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	165, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 277
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	165, 369
BseGI	GGATG	2 cut(s)	271, 626
BseLI	CCNNNNNNNGG	2 cut(s)	50, 277
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	75, 342
BseXI	GCAGC	4 cut(s)	493, 496, 499, 602
BshFI	GGCC	2 cut(s)	281, 374
BslFI	GGGAC	2 cut(s)	115, 486
BslI	CCNNNNNNNGG	2 cut(s)	50, 277
BsmAI	GTCTC	3 cut(s)	64, 164, 341
BsmBI	CGTCTC	2 cut(s)	64, 164
BsmFI	GGGAC	2 cut(s)	115, 486
BsnI	GGCC	2 cut(s)	281, 374
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	2 cut(s)	44, 69
BspANI	GGCC	2 cut(s)	281, 374
BspCNI	CTCAG	2 cut(s)	74, 343
BspHI	TCATGA	2 cut(s)	120, 553
BspLI	GGNNCC	3 cut(s)	73, 92, 316
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	165, 369
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	2 cut(s)	165, 369
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	44, 138
BstDEI	CTNAG	2 cut(s)	61, 351
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	271, 626
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	3 cut(s)	64, 164, 341
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstV1I	GCAGC	4 cut(s)	493, 496, 499, 602
BstV2I	GAAGAC	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	281, 374
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	271, 626
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	44, 138
CciI	TCATGA	2 cut(s)	120, 553
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	175, 279, 314
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	6 cut(s)	121, 283, 370, 395, 527, 554
CviJI	RGCY	7 cut(s)	42, 114, 164, 204, 281, 374, 593
CviKI_1	RGCY	7 cut(s)	42, 114, 164, 204, 281, 374, 593
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	61, 351
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	165, 369
Eco47I	GGWCC	2 cut(s)	175, 314
EcoT14I	CCWWGG	2 cut(s)	165, 369
ErhI	CCWWGG	2 cut(s)	165, 369
Esp3I	CGTCTC	2 cut(s)	64, 164
FaeI	CATG	6 cut(s)	124, 286, 373, 398, 530, 557
FaqI	GGGAC	2 cut(s)	115, 486
FatI	CATG	6 cut(s)	120, 282, 369, 394, 526, 553
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	482, 485, 488, 591
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	482, 485, 488, 591
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	4 cut(s)	482, 485, 488, 591
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	281, 374
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	6 cut(s)	124, 286, 373, 398, 530, 557
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	297, 550
Hpy188I	TCNGA	3 cut(s)	64, 193, 226
Hpy188III	TCNNGA	3 cut(s)	121, 301, 554
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	23, 57, 108
HpyCH4V	TGCA	2 cut(s)	140, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	61, 351
HpySE526I	ACGT	3 cut(s)	23, 57, 108
Hsp92II	CATG	6 cut(s)	124, 286, 373, 398, 530, 557
HspAI	GCGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	406
Lsp1109I	GCAGC	4 cut(s)	493, 496, 499, 602
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	3 cut(s)	23, 57, 108
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	136, 392, 395
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	4 cut(s)	304, 323, 505, 538
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	16, 292
MnlI	CCTC	4 cut(s)	104, 346, 402, 446
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MslI	CAYNNNNRTG	2 cut(s)	393, 558
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	46, 69
MwoI	GCNNNNNNNGC	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	6 cut(s)	124, 286, 373, 398, 530, 557
NlaIV	GGNNCC	3 cut(s)	73, 92, 316
PagI	TCATGA	2 cut(s)	120, 553
PfeI	GAWTC	2 cut(s)	297, 550
PkrI	GCNGC	4 cut(s)	483, 486, 489, 592
PspN4I	GGNNCC	3 cut(s)	73, 92, 316
PspPI	GGNCC	3 cut(s)	175, 279, 314
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	393, 558
SatI	GCNGC	4 cut(s)	482, 485, 488, 591
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	3 cut(s)	175, 279, 314
SetI	ASST	8 cut(s)	26, 60, 92, 111, 206, 273, 457, 595
SfaNI	GCATC	1 cut(s)	230
SinI	GGWCC	2 cut(s)	175, 314
SmiMI	CAYNNNNRTG	2 cut(s)	393, 558
Sse9I	AATT	4 cut(s)	304, 323, 505, 538
SsiI	CCGC	2 cut(s)	44, 69
StyI	CCWWGG	2 cut(s)	165, 369
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	3 cut(s)	26, 60, 111
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	304, 323, 505, 538
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	297, 550
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	4 cut(s)	481, 484, 487, 590
TspDTI	ATGAA	5 cut(s)	137, 187, 196, 542, 596
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	175, 314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.