Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

25787384 .. 25788545

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTTGGTTCCATGGAACTTCCATTCCACATCATAAACACTTCAACGCAAGGAAGAGGAAGAGAGGGAAAAAACCTAAACACAATGAGTGGAAAAAGAAATCAAACGTGTAGCCCGGTTGGAAGCCCGCTGTCTGGGAACGTCTCAGACAGCAGTTCCAAAGAGCAAGACAGGTTCCTCCCCATTGCGAACGTGAGCCGTATCATGAAGAAGTCCCTGCCTGCAAATGCCAAGATTTCAAAGGAAGCTAAGGAGACGGTCCAAGAATGTGTATCGGAGTTCATAAGCTTCATCACGGGCGAAGCATCGGACAAGTGCCAGAGAGAAAAGAGAAAGACTATCAACGGGGATGACCTACTTTGGGCCATGACAACTCTGGGATTCGAGAATTATGTTGGACCCTTGAAAATGTATCTCAACAAGTACAGGGAGACCGAGGGAGATAAGAACTCCATGGCCAGAGAAGAAGACCACCCTCATGGTTCTAATGGTCAAACCAACATTATTTTAAGTAACAAGATGGATCTTTCGAATGAAGGTTTCTATTCAGTTGGGGGACGACAGCAGCAGCAGCAAGTGATGACTTCAAATTACAATTTGGCGAGTAGTCATGGCGCTTACAATTTCAGTAGGATTCATGAGAGTGGAGATGGCAGTGCAAACAGAGATTTGGCAGCTCATCATCATCTTCATAACGGGATAGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

237

Amino Acids

26.18

Weight (kDa)

7.78

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	59 - 123	5.6e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	456
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	134, 361
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	45, 240, 406, 588
AloI	GAACNNNNNNTCC	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	248, 288, 677
AluI	AGCT	3 cut(s)	248, 288, 677
Alw26I	GTCTC	3 cut(s)	148, 248, 425
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	2 cut(s)	363, 456
ApeKI	GCWGC	4 cut(s)	565, 568, 571, 674
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	259, 363, 398
AsuC2I	CCSGG	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	259, 398
BalI	TGGCCA	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	577, 580, 583, 686
BccI	CCATC	3 cut(s)	514, 644, 699
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	148, 248, 425
BfoI	RGCGCY	1 cut(s)	618
BisI	GCNGC	4 cut(s)	566, 569, 572, 675
BlsI	GCNGC	4 cut(s)	567, 570, 573, 676
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	259, 398
BmgT120I	GGNCC	3 cut(s)	259, 363, 398
BmiI	GGNNCC	3 cut(s)	10, 176, 400
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	12, 435, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 361
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	12, 435, 453
BseGI	GGATG	2 cut(s)	355, 710
BseLI	CCNNNNNNNGG	2 cut(s)	134, 361
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	577, 580, 583, 686
BshFI	GGCC	2 cut(s)	365, 458
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	199, 570
BslI	CCNNNNNNNGG	2 cut(s)	134, 361
BsmAI	GTCTC	3 cut(s)	148, 248, 425
BsmBI	CGTCTC	2 cut(s)	148, 248
BsmFI	GGGAC	2 cut(s)	199, 570
BsnI	GGCC	2 cut(s)	365, 458
Bso31I	GGTCTC	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	523
Bsp19I	CCATGG	2 cut(s)	12, 453
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	365, 458
BspCNI	CTCAG	1 cut(s)	158
BspHI	TCATGA	2 cut(s)	204, 637
BspLI	GGNNCC	3 cut(s)	10, 176, 400
BspPI	GGATC	1 cut(s)	531
BspT104I	TTCGAA	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	183
BssECI	CCNNGG	3 cut(s)	12, 435, 453
BssMI	GATC	1 cut(s)	523
BssT1I	CCWWGG	2 cut(s)	12, 453
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	49, 55
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	128, 222
BstDEI	CTNAG	2 cut(s)	145, 249
BstDSI	CCRYGG	2 cut(s)	12, 453
BstF5I	GGATG	2 cut(s)	355, 710
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	3 cut(s)	148, 248, 425
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	577, 580, 583, 686
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	2 cut(s)	365, 458
BtgI	CCRYGG	2 cut(s)	12, 453
BtsCI	GGATG	2 cut(s)	355, 710
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	128, 222
CciI	TCATGA	2 cut(s)	204, 637
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	259, 363, 398
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	7 cut(s)	13, 205, 367, 454, 479, 611, 638
CviJI	RGCY	8 cut(s)	114, 126, 198, 248, 288, 365, 458, 677
CviKI_1	RGCY	8 cut(s)	114, 126, 198, 248, 288, 365, 458, 677
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	145, 249
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	49, 55
EarI	CTCTTC	2 cut(s)	49, 55
Eco130I	CCWWGG	2 cut(s)	12, 453
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	259, 398
EcoT14I	CCWWGG	2 cut(s)	12, 453
ErhI	CCWWGG	2 cut(s)	12, 453
Esp3I	CGTCTC	2 cut(s)	148, 248
FaeI	CATG	7 cut(s)	16, 208, 370, 457, 482, 614, 641
FaqI	GGGAC	2 cut(s)	199, 570
FatI	CATG	7 cut(s)	12, 204, 366, 453, 478, 610, 637
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	566, 569, 572, 675
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	566, 569, 572, 675
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	4 cut(s)	566, 569, 572, 675
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	365, 458
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	7 cut(s)	16, 208, 370, 457, 482, 614, 641
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	2 cut(s)	381, 634
HpaII	CCGG	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	148, 277, 310
Hpy188III	TCNNGA	3 cut(s)	205, 385, 638
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	3 cut(s)	107, 141, 192
HpyCH4V	TGCA	2 cut(s)	224, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	145, 249
HpySE526I	ACGT	3 cut(s)	107, 141, 192
Hsp92II	CATG	7 cut(s)	16, 208, 370, 457, 482, 614, 641
HspAI	GCGC	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	523
LpnPI	CCDG	9 cut(s)	120, 129, 157, 230, 234, 332, 362, 412, 472
Lsp1109I	GCAGC	4 cut(s)	577, 580, 583, 686
LweI	GCATC	1 cut(s)	314
MaeII	ACGT	3 cut(s)	107, 141, 192
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	6 cut(s)	66, 72, 220, 476, 479, 680
MflI	RGATCY	1 cut(s)	523
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	4 cut(s)	388, 589, 595, 622
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	100, 376
MnlI	CCTC	5 cut(s)	50, 58, 188, 430, 486
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	477, 642
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	571
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	2 cut(s)	12, 453
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	7 cut(s)	16, 208, 370, 457, 482, 614, 641
NlaIV	GGNNCC	3 cut(s)	10, 176, 400
NspV	TTCGAA	1 cut(s)	530
PagI	TCATGA	2 cut(s)	204, 637
PfeI	GAWTC	2 cut(s)	381, 634
PkrI	GCNGC	4 cut(s)	567, 570, 573, 676
PspN4I	GGNNCC	3 cut(s)	10, 176, 400
PspPI	GGNCC	3 cut(s)	259, 363, 398
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	477, 642
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	4 cut(s)	566, 569, 572, 675
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	3 cut(s)	259, 363, 398
ScrFI	CCNGG	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	2 cut(s)	259, 398
SmiMI	CAYNNNNRTG	2 cut(s)	477, 642
Sse9I	AATT	4 cut(s)	388, 589, 595, 622
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	12, 453
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	3 cut(s)	110, 144, 195
TaqI	TCGA	2 cut(s)	384, 530
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	4 cut(s)	388, 589, 595, 622
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	381, 634
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	4 cut(s)	565, 568, 571, 674
TspDTI	ATGAA	6 cut(s)	221, 271, 280, 549, 626, 680
TspRI	CASTG	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	259, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.