Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_6

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

45018 .. 45575

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c6g00060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTAGATAACAGAGGCAACAACAGCAACAGTATTATTAGTTCAGACTCCAGAGAAGGGTTTAACTACAATTTCTCAGGAGATCGTGACCATCACGATGATATGATCAAGGAGCAAGATCGACTGCTTCCTATAGCAAACGTCGGTCGAATCATGAAGCAAATCCTTCCCCCAAATGCGAAAATCTCCAAAGAGGCCAAGGAAACCATGCAAGAGTGCGTCTCCGAGTTCATTAGCTTTGTGACCGGAGAAGCCTCAGATAAGTGTCACAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATTTGCTGGGCCTTATCCACGCTGGGGTTCGACGACTACTCGGAGCCGCTGAAGAGGTACTTGCATAGGTTCAGGGAATTGGAGGGGGAGAAGGCTCAGCAGAGCAAAGCCAACAGCGGAGGTGAAGATCAAAGGAACGAAGTGGTGGAGGTGTCACCGACAAGAGCAAGTACCACTTCCAGTTCTACTCCATTAATGAAGTTCAATATGATGAATATTGAAAGGGGTAATAGCTCAATCCCTCGGCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

186

Amino Acids

21.0

Weight (kDa)

6.12

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	30 - 106	2.5e-08	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	42 - 106	9.2e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	350, 420
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	362, 475
AfiI	CCNNNNNNNGG	2 cut(s)	57, 327
AgsI	TTSAA	2 cut(s)	508, 524
AluBI	AGCT	2 cut(s)	237, 537
AluI	AGCT	2 cut(s)	237, 537
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	195, 312
AseI	ATTAAT	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	3 cut(s)	301, 437, 450
BbsI	GAAGAC	1 cut(s)	290
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	198, 545
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 327
Bse1I	ACTGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	198, 545
BseLI	CCNNNNNNNGG	2 cut(s)	57, 327
BseMII	CTCAG	3 cut(s)	90, 270, 413
BseNI	ACTGG	1 cut(s)	483
BseYI	CCCAGC	2 cut(s)	309, 325
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	197, 314
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	57, 327
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	197, 314
Bsp143I	GATC	4 cut(s)	82, 105, 118, 430
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	2 cut(s)	350, 420
BspANI	GGCC	2 cut(s)	197, 314
BspCNI	CTCAG	3 cut(s)	89, 269, 412
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	2 cut(s)	198, 545
BssMI	GATC	4 cut(s)	82, 105, 118, 430
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	32, 289
Bst6I	CTCTTC	2 cut(s)	272, 350
BstDEI	CTNAG	3 cut(s)	76, 256, 399
BstKTI	GATC	4 cut(s)	85, 108, 121, 433
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	4 cut(s)	82, 105, 118, 430
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	197, 314
CciI	TCATGA	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	361, 474
CviAII	CATG	2 cut(s)	154, 208
CviJI	RGCY	8 cut(s)	197, 237, 254, 314, 349, 398, 413, 537
CviKI_1	RGCY	8 cut(s)	197, 237, 254, 314, 349, 398, 413, 537
CviQI	GTAC	2 cut(s)	361, 474
DdeI	CTNAG	3 cut(s)	76, 256, 399
DpnI	GATC	4 cut(s)	84, 107, 120, 432
DpnII	GATC	4 cut(s)	82, 105, 118, 430
Eam1104I	CTCTTC	2 cut(s)	272, 350
EarI	CTCTTC	2 cut(s)	272, 350
Eco130I	CCWWGG	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	157, 211
FaiI	YATR	6 cut(s)	104, 134, 155, 209, 369, 512
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 463, 495
FatI	CATG	2 cut(s)	153, 207
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	2 cut(s)	313, 329
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	197, 314
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	157, 211
HinfI	GANTC	3 cut(s)	47, 150, 552
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	3 cut(s)	301, 437, 450
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	5 cut(s)	46, 226, 259, 346, 557
Hpy188III	TCNNGA	5 cut(s)	51, 78, 86, 95, 154
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	3 cut(s)	146, 302, 338
HpyAV	CCTTC	3 cut(s)	50, 176, 388
HpyCH4III	ACNGT	2 cut(s)	32, 289
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	211, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	76, 256, 399
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	157, 211
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	82, 105, 118, 430
LmnI	GCTCC	2 cut(s)	112, 346
LpnPI	CCDG	7 cut(s)	63, 64, 259, 295, 311, 361, 496
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	86, 241, 266, 456
MalI	GATC	4 cut(s)	84, 107, 120, 432
MboI	GATC	4 cut(s)	82, 105, 118, 430
MboII	GAAGA	4 cut(s)	289, 295, 367, 440
MluCI	AATT	2 cut(s)	70, 380
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	8, 187, 265, 273, 351, 379, 416, 445, 555
MseI	TTAA	2 cut(s)	63, 497
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	352, 420
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	4 cut(s)	82, 105, 118, 430
NlaIII	CATG	2 cut(s)	157, 211
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	4 cut(s)	86, 241, 266, 456
PagI	TCATGA	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	150, 552
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	497
PspFI	CCCAGC	2 cut(s)	309, 325
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	312
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
RsaI	GTAC	2 cut(s)	362, 475
RsaNI	GTAC	2 cut(s)	361, 474
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	63, 497
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	82, 105, 118, 430
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	41
SetI	ASST	7 cut(s)	144, 239, 362, 374, 427, 456, 539
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	70, 380
SsiI	CCGC	2 cut(s)	350, 420
SspI	AATATT	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	32, 289
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	121, 148, 333
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	70, 380
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	150, 552
Tru1I	TTAA	2 cut(s)	63, 497
Tru9I	TTAA	2 cut(s)	63, 497
TseFI	GTSAC	4 cut(s)	86, 241, 266, 456
Tsp45I	GTSAC	4 cut(s)	86, 241, 266, 456
TspDTI	ATGAA	4 cut(s)	170, 220, 515, 530
VspI	ATTAAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.