Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

21852595 .. 21853514

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATAATAACATAGGCAATAATTCATCAGAGAGAGAAGGGTTTAAGTACAATTTCACAGGCAGTAGTATCTCTAGCGATCATCATCATCATCAAGAAGATGGGGTCATCAAGGAGCAAGATCGGCTGCTTCCGATTGCTAATGTTGGGCGGATCATGAAGCAAATTCTTCCCCCAAATGCAAAAATCTCGAAAGAAGCCAAAGAAACCATGCAGGAATGTGTTTCTGAGTTTATAAGCTTTGTGACTGGAGAAGCATCTGACAAGTGTCACAAAGAGAAGCGCAAGACAGTGAATGGCGATGACATTTGCTGGGCTCTTGCAACTCTTGGCTTCGATGATTATGCTGAACCATTGAAGAGGTATTTGCATAGGTACAGAGAATTGGAAGGAGAGAAGGCGGCTCACCAAGGCAAGGCCAACAGTAGTGAAGAAAAAAACGAACTGTCACCACCAAGGACAAGTACCTCTAGTCCCTTAAAGTTCAATGTGCTTGAAAGGGGAAATAGCTCCCTCTCCCGGCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

177

Amino Acids

19.91

Weight (kDa)

6.66

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AciI	CCGC	2 cut(s)	151, 401
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	3 cut(s)	50, 377, 466
AfiI	CCNNNNNNNGG	2 cut(s)	415, 519
AgsI	TTSAA	3 cut(s)	358, 487, 497
AluBI	AGCT	2 cut(s)	240, 510
AluI	AGCT	2 cut(s)	240, 510
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	398, 441
BanII	GRGCYC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	95
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 326, 360
BcnI	CCSGG	1 cut(s)	520
BfaI	CTAG	2 cut(s)	75, 471
BisI	GCNGC	2 cut(s)	128, 402
BlsI	GCNGC	2 cut(s)	129, 403
Bme1390I	CCNGG	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	409, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 519
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	409, 455
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	415, 519
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	415, 519
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	79, 121, 153
BspACI	CCGC	2 cut(s)	151, 401
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	156
BspPI	GGATC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	409, 455
BssMI	GATC	3 cut(s)	79, 121, 153
BssT1I	CCWWGG	2 cut(s)	409, 455
Bst4CI	ACNGT	3 cut(s)	292, 425, 447
Bst6I	CTCTTC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	3 cut(s)	82, 124, 156
BstMBI	GATC	3 cut(s)	79, 121, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	297
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	49, 376, 465
CviAII	CATG	2 cut(s)	157, 211
CviJI	RGCY	8 cut(s)	127, 200, 240, 317, 333, 404, 419, 510
CviKI_1	RGCY	8 cut(s)	127, 200, 240, 317, 333, 404, 419, 510
CviQI	GTAC	3 cut(s)	49, 376, 465
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	81, 123, 155
DpnII	GATC	3 cut(s)	79, 121, 153
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	409, 455
Eco24I	GRGCYC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	409, 455
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	2 cut(s)	409, 455
FaeI	CATG	2 cut(s)	160, 214
FaiI	YATR	6 cut(s)	14, 158, 212, 236, 345, 372
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	2 cut(s)	156, 210
Fnu4HI	GCNGC	2 cut(s)	128, 402
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	128, 402
FspBI	CTAG	2 cut(s)	75, 471
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	128, 402
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	520
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	160, 214
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	238
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	2 cut(s)	398, 441
Hpy188I	TCNGA	4 cut(s)	31, 135, 229, 262
Hpy188III	TCNNGA	3 cut(s)	95, 157, 190
HpyAV	CCTTC	3 cut(s)	32, 383, 391
HpyCH4III	ACNGT	3 cut(s)	292, 425, 447
HpyCH4V	TGCA	4 cut(s)	182, 214, 323, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	160, 214
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	79, 121, 153
LmnI	GCTCC	2 cut(s)	115, 515
LpnPI	CCDG	4 cut(s)	45, 200, 234, 298
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	2 cut(s)	75, 471
MaeIII	GTNAC	3 cut(s)	244, 269, 447
MalI	GATC	3 cut(s)	81, 123, 155
MboI	GATC	3 cut(s)	79, 121, 153
MboII	GAAGA	4 cut(s)	110, 161, 370, 443
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	4 cut(s)	22, 52, 165, 383
MnlI	CCTC	3 cut(s)	354, 478, 524
MseI	TTAA	2 cut(s)	45, 479
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	3 cut(s)	79, 121, 153
NlaIII	CATG	2 cut(s)	160, 214
NmuCI	GTSAC	3 cut(s)	244, 269, 447
PagI	TCATGA	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	129, 403
PshAI	GACNNNNGTC	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	312
RsaI	GTAC	3 cut(s)	50, 377, 466
RsaNI	GTAC	3 cut(s)	49, 376, 465
SaqAI	TTAA	2 cut(s)	45, 479
SatI	GCNGC	2 cut(s)	128, 402
Sau3AI	GATC	3 cut(s)	79, 121, 153
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	5 cut(s)	242, 365, 377, 470, 512
SfaNI	GCATC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	22, 52, 165, 383
SsiI	CCGC	2 cut(s)	151, 401
SspMI	CTAG	2 cut(s)	75, 471
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	2 cut(s)	409, 455
TaaI	ACNGT	3 cut(s)	292, 425, 447
TaqI	TCGA	2 cut(s)	191, 336
TasI	AATT	4 cut(s)	22, 52, 165, 383
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	45, 479
Tru9I	TTAA	2 cut(s)	45, 479
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	3 cut(s)	244, 269, 447
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	3 cut(s)	244, 269, 447
TspDTI	ATGAA	2 cut(s)	15, 173
TspRI	CASTG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	165
XspI	CTAG	2 cut(s)	75, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.